Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    Bsn bassoon [ Mus musculus (house mouse) ]

    Gene ID: 12217, updated on 22-Apr-2018
    Official Symbol
    Bsnprovided by MGI
    Official Full Name
    bassoonprovided by MGI
    Primary source
    MGI:MGI:1277955
    See related
    Ensembl:ENSMUSG00000032589 Vega:OTTMUSG00000016899
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in cortex adult (RPKM 15.2), frontal lobe adult (RPKM 14.2) and 16 other tissues See more
    Orthologs
    Location:
    9 F1; 9 59.07 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (108096022..108190419, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (107998353..108092714, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene microRNA 7088 Neighboring gene macrophage stimulating 1 (hepatocyte growth factor-like) Neighboring gene acylpeptide hydrolase Neighboring gene predicted gene, 46132 Neighboring gene RIKEN cDNA 4930447F24 gene Neighboring gene dystroglycan 1 Neighboring gene nicolin 1

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    dynein light chain binding ISO
    Inferred from Sequence Orthology
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transcription corepressor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    axo-dendritic transport ISO
    Inferred from Sequence Orthology
    more info
     
    presynapse to nucleus signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein localization to synapse IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    retrograde axonal transport ISO
    Inferred from Sequence Orthology
    more info
     
    synapse assembly IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    axon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    axon cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton of presynaptic active zone ISO
    Inferred from Sequence Orthology
    more info
     
    dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    excitatory synapse ISO
    Inferred from Sequence Orthology
    more info
     
    extrinsic component of membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    inhibitory synapse ISO
    Inferred from Sequence Orthology
    more info
     
    NOT integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    neuron projection IEA
    Inferred from Electronic Annotation
    more info
     
    neuron projection terminus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    piccolo-bassoon transport vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    postsynaptic density IDA
    Inferred from Direct Assay
    more info
    PubMed 
    presynapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    presynaptic active zone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    presynaptic active zone ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    presynaptic active zone cytoplasmic component IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ribbon synapse ISO
    Inferred from Sequence Orthology
    more info
     
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synapse ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    colocalizes_with synaptic membrane ISO
    Inferred from Sequence Orthology
    more info
     
    trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    protein bassoon
    Names
    presynaptic cytomatrix protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007567.2NP_031593.2  protein bassoon

      See identical proteins and their annotated locations for NP_031593.2

      Status: VALIDATED

      Source sequence(s)
      AC137678, AI836567, AK129141, AK135719, BY742476
      Consensus CDS
      CCDS23517.1
      UniProtKB/Swiss-Prot
      O88737
      UniProtKB/TrEMBL
      Q3UXD6
      Related
      ENSMUSP00000035208.6, OTTMUSP00000018359, ENSMUST00000035208.13, OTTMUST00000041006
      Conserved Domains (3) summary
      cd15772
      Location:462525
      FYVE2_BSN_PCLO; FYVE-related domain 2 found in protein bassoon and piccolo
      cd15773
      Location:162225
      FYVE1_BSN; FYVE-related domain 1 found in protein bassoon
      pfam10310
      Location:558645
      DUF2413; Protein of unknown function (DUF2413)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      108096022..108190419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511634.3XP_006511697.1  protein bassoon isoform X1

      See identical proteins and their annotated locations for XP_006511697.1

      UniProtKB/Swiss-Prot
      O88737
      Conserved Domains (3) summary
      cd15772
      Location:462525
      FYVE2_BSN_PCLO; FYVE-related domain 2 found in protein bassoon and piccolo
      cd15773
      Location:162225
      FYVE1_BSN; FYVE-related domain 1 found in protein bassoon
      pfam10310
      Location:558645
      DUF2413; Protein of unknown function (DUF2413)
    Support Center