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    Nfyc nuclear transcription factor-Y gamma [ Mus musculus (house mouse) ]

    Gene ID: 18046, updated on 12-Mar-2017
    Official Symbol
    Nfycprovided by MGI
    Official Full Name
    nuclear transcription factor-Y gammaprovided by MGI
    Primary source
    MGI:MGI:107901
    See related
    Ensembl:ENSMUSG00000032897 Vega:OTTMUSG00000008852
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    Location:
    4 D2.2; 4 56.52 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (120757435..120831579, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (120430040..120498320, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 Neighboring gene potassium voltage-gated channel, subfamily Q, member 4 Neighboring gene microRNA 30c-1 Neighboring gene microRNA 30e Neighboring gene microRNA 30f Neighboring gene regulating synaptic membrane exocytosis 3 Neighboring gene 60S ribosomal protein L26-like 1 pseudogene

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    CCAAT-binding factor complex ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    protein-DNA complex ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor complex IC
    Inferred by Curator
    more info
    PubMed 
    Preferred Names
    nuclear transcription factor Y subunit gamma
    Names
    CAAT box DNA-binding protein subunit C
    nuclear transcription factor Y subunit C

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001048168.2NP_001041633.1  nuclear transcription factor Y subunit gamma isoform 1

      See identical proteins and their annotated locations for NP_001041633.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same isoform (1).
      Source sequence(s)
      AB006181, AK011327, BC053723, BE647422, DV650959
      Consensus CDS
      CCDS18594.1
      UniProtKB/Swiss-Prot
      P70353
      UniProtKB/TrEMBL
      Q7TPS7
      Related
      ENSMUSP00000112610, OTTMUSP00000009231, ENSMUST00000118902, OTTMUST00000020129
      Conserved Domains (1) summary
      pfam00808
      Location:42105
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    2. NM_001277095.1NP_001264024.1  nuclear transcription factor Y subunit gamma isoform 2

      See identical proteins and their annotated locations for NP_001264024.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AB006181, AK011327, AL606904, BE647422
      UniProtKB/Swiss-Prot
      P70353
      UniProtKB/TrEMBL
      Q3U114
      Conserved Domains (1) summary
      cl23735
      Location:4260
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
    3. NM_008692.4NP_032718.2  nuclear transcription factor Y subunit gamma isoform 1

      See identical proteins and their annotated locations for NP_032718.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Both variants 1 and 2 encode the same isoform (1).
      Source sequence(s)
      AB006181, AK011327, AL606904, BE647422
      Consensus CDS
      CCDS18594.1
      UniProtKB/Swiss-Prot
      P70353
      Related
      ENSMUSP00000047441, OTTMUSP00000009230, ENSMUST00000043429, OTTMUST00000020128
      Conserved Domains (1) summary
      pfam00808
      Location:42105
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      120757435..120831579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006502849.3XP_006502912.1  nuclear transcription factor Y subunit gamma isoform X3

      Conserved Domains (1) summary
      cl23735
      Location:2581
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
    2. XM_006502851.3XP_006502914.1  nuclear transcription factor Y subunit gamma isoform X4

      Conserved Domains (1) summary
      COG5208
      Location:2361
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    3. XM_017320025.1XP_017175514.1  nuclear transcription factor Y subunit gamma isoform X2

      UniProtKB/Swiss-Prot
      P70353
      Conserved Domains (1) summary
      pfam00808
      Location:42105
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    4. XM_017320024.1XP_017175513.1  nuclear transcription factor Y subunit gamma isoform X2

      UniProtKB/Swiss-Prot
      P70353
      Conserved Domains (1) summary
      pfam00808
      Location:42105
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    5. XM_006502846.1XP_006502909.1  nuclear transcription factor Y subunit gamma isoform X2

      See identical proteins and their annotated locations for XP_006502909.1

      UniProtKB/Swiss-Prot
      P70353
      Related
      ENSMUSP00000112810, OTTMUSP00000009232, ENSMUST00000120779, OTTMUST00000020130
      Conserved Domains (1) summary
      pfam00808
      Location:42105
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    6. XM_017320023.1XP_017175512.1  nuclear transcription factor Y subunit gamma isoform X1

      Conserved Domains (1) summary
      pfam00808
      Location:42104
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

    RNA

    1. XR_001784106.1 RNA Sequence

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