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    Sp9 trans-acting transcription factor 9 [ Mus musculus (house mouse) ]

    Gene ID: 381373, updated on 25-May-2017
    Official Symbol
    Sp9provided by MGI
    Official Full Name
    trans-acting transcription factor 9provided by MGI
    Primary source
    MGI:MGI:3574660
    See related
    Ensembl:ENSMUSG00000068859 Vega:OTTMUSG00000013274
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    Location:
    2; 2 C3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (73271926..73275771)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (73109983..73113828)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene Obg-like ATPase 1 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene ribosomal protein L7A pseudogene Neighboring gene corepressor interacting with RBPJ, 1 Neighboring gene secernin 3

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    embryonic limb morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription from RNA polymerase II promoter IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Preferred Names
    transcription factor Sp9
    Names
    buttonhead-like zinc finger transcription factor Sp9

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005343.2NP_001005343.1  transcription factor Sp9

      See identical proteins and their annotated locations for NP_001005343.1

      Status: VALIDATED

      Source sequence(s)
      AL954713, AY591908
      Consensus CDS
      CCDS16126.1
      UniProtKB/Swiss-Prot
      Q64HY3
      Related
      ENSMUSP00000088322.5, OTTMUSP00000014270, ENSMUST00000090813.5, OTTMUST00000032085
      Conserved Domains (3) summary
      sd00017
      Location:337356
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:392414
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:378401
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      73271926..73275771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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