Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    Syp synaptophysin [ Mus musculus (house mouse) ]

    Gene ID: 20977, updated on 22-Apr-2017
    Official Symbol
    Sypprovided by MGI
    Official Full Name
    synaptophysinprovided by MGI
    Primary source
    MGI:MGI:98467
    See related
    Ensembl:ENSMUSG00000031144 Vega:OTTMUSG00000017756
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Syn; p38; AI848995; A230093K24Rik
    Orthologs
    Location:
    X A1.1; X 3.44 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (7638580..7653256)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (7215706..7230382)

    Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene forkhead box P3 Neighboring gene coiled-coil domain containing 22 Neighboring gene calcium channel, voltage-dependent, alpha 1F subunit Neighboring gene prickle planar cell polarity protein 3 Neighboring gene proteolipid protein 2 Neighboring gene MAGI family member, X-linked

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    SH2 domain binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cholesterol binding ISO
    Inferred from Sequence Orthology
    more info
     
    identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    syntaxin-1 binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular response to organic substance IDA
    Inferred from Direct Assay
    more info
    PubMed 
    chemical synaptic transmission TAS
    Traceable Author Statement
    more info
    PubMed 
    endocytosis ISO
    Inferred from Sequence Orthology
    more info
     
    endocytosis TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of long-term neuronal synaptic plasticity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of neuronal synaptic plasticity IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of opioid receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of short-term neuronal synaptic plasticity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    synaptic vesicle endocytosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    excitatory synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    excitatory synapse ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of synaptic vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of synaptic vesicle membrane TAS
    Traceable Author Statement
    more info
    PubMed 
    intracellular organelle ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuromuscular junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuron projection IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuron projection IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neuron projection ISO
    Inferred from Sequence Orthology
    more info
     
    neuron projection terminus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neuron projection terminus ISO
    Inferred from Sequence Orthology
    more info
     
    presynaptic active zone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    presynaptic active zone ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    presynaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein complex ISO
    Inferred from Sequence Orthology
    more info
     
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synaptic vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synaptic vesicle ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    synaptic vesicle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synaptic vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    terminal bouton IDA
    Inferred from Direct Assay
    more info
    PubMed 
    terminal bouton ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    synaptophysin
    Names
    BM89 antigen
    Syp I
    major synaptic vesicle protein p38

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009305.2NP_033331.2  synaptophysin

      See identical proteins and their annotated locations for NP_033331.2

      Status: VALIDATED

      Source sequence(s)
      AI325251, AK043756, BC052354, BY239748
      Consensus CDS
      CCDS29967.2
      UniProtKB/Swiss-Prot
      Q62277
      Related
      ENSMUSP00000069429.4, OTTMUSP00000019333, ENSMUST00000069520.10, OTTMUST00000043002
      Conserved Domains (1) summary
      pfam01284
      Location:22222
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

      Range
      7638580..7653256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center