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    Reep6 receptor accessory protein 6 [ Mus musculus (house mouse) ]

    Gene ID: 70335, updated on 22-Apr-2017
    Official Symbol
    Reep6provided by MGI
    Official Full Name
    receptor accessory protein 6provided by MGI
    Primary source
    MGI:MGI:1917585
    See related
    Ensembl:ENSMUSG00000035504 Vega:OTTMUSG00000000018
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dp1l1; 0610011M24Rik
    Orthologs
    Location:
    10; 10 C1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (80330003..80336441)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (79792915..79799186)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene adenomatosis polyposis coli 2 Neighboring gene RIKEN cDNA 2310011J03 gene Neighboring gene proprotein convertase subtilisin/kexin type 4 Neighboring gene ADAMTS-like 5 Neighboring gene polo-like kinase 5

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    detection of light stimulus involved in visual perception ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of intracellular transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    apical part of cell IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    photoreceptor inner segment ISO
    Inferred from Sequence Orthology
    more info
     
    NOT plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    rod spherule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    receptor expression-enhancing protein 6
    Names
    TB2 protein-like 1
    deleted in polyposis 1-like 1
    polyposis locus protein 1-like 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001204931.1NP_001191860.1  receptor expression-enhancing protein 6 isoform 2

      See identical proteins and their annotated locations for NP_001191860.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC152062
      Consensus CDS
      CCDS56735.1
      UniProtKB/Swiss-Prot
      Q9JM62
      Related
      ENSMUSP00000100992.1, OTTMUSP00000021714, ENSMUST00000105355.7, OTTMUST00000047780
      Conserved Domains (1) summary
      pfam03134
      Location:54142
      TB2_DP1_HVA22; TB2/DP1, HVA22 family
    2. NM_139292.2NP_647453.1  receptor expression-enhancing protein 6 isoform 1

      See identical proteins and their annotated locations for NP_647453.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AB039933, AK002562
      Consensus CDS
      CCDS35979.1
      UniProtKB/Swiss-Prot
      Q9JM62
      Related
      ENSMUSP00000140840.1, ENSMUST00000186864.6
      Conserved Domains (1) summary
      pfam03134
      Location:54142
      TB2_DP1_HVA22; TB2/DP1, HVA22 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      80330003..80336441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514077.1XP_006514140.1  receptor expression-enhancing protein 6 isoform X1

      Related
      ENSMUSP00000100995.1, OTTMUSP00000020650, ENSMUST00000105358.7, OTTMUST00000045836
      Conserved Domains (1) summary
      pfam03134
      Location:54142
      TB2_DP1_HVA22; TB2/DP1, HVA22 family
    2. XM_006514078.3XP_006514141.1  receptor expression-enhancing protein 6 isoform X2

      Conserved Domains (1) summary
      pfam03134
      Location:54142
      TB2_DP1_HVA22; TB2/DP1, HVA22 family
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