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    ATG13 autophagy related 13 [ Homo sapiens (human) ]

    Gene ID: 9776, updated on 11-May-2017
    Official Symbol
    ATG13provided by HGNC
    Official Full Name
    autophagy related 13provided by HGNC
    Primary source
    HGNC:HGNC:29091
    See related
    Ensembl:ENSG00000175224 MIM:615088; Vega:OTTHUMG00000166538
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    KIAA0652; PARATARG8
    Summary
    The protein encoded by this gene is an autophagy factor and a target of the TOR kinase signaling pathway. The encoded protein is essential for autophagosome formation and mitophagy. [provided by RefSeq, Oct 2016]
    Orthologs
    Location:
    11p11.2
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    108 current GRCh38.p7 (GCF_000001405.33) 11 NC_000011.10 (46617276..46676019)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (46638826..46697569)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene autophagy and beclin 1 regulator 1 Neighboring gene ribosomal protein S10 pseudogene 19 Neighboring gene microRNA 3160-1 Neighboring gene microRNA 3160-2 Neighboring gene harbinger transposase derived 1 Neighboring gene Rho GTPase activating protein 1 Neighboring gene zinc finger protein 408

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • Autophagy - animal, organism-specific biosystem (from KEGG)
      Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - animal, conserved biosystem (from KEGG)
      Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - other, organism-specific biosystem (from KEGG)
      Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Autophagy - other, conserved biosystem (from KEGG)
      Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Cellular responses to stress, organism-specific biosystem (from REACTOME)
      Cellular responses to stress, organism-specific biosystemCells are subject to external molecular and physical stresses such as foreign molecules that perturb metabolic or signaling processes, and changes in temperature or pH. The ability of cells and tissu...
    • Longevity regulating pathway, organism-specific biosystem (from KEGG)
      Longevity regulating pathway, organism-specific biosystemRegulation of longevity depends on genetic and environmental factors. Caloric restriction (CR), that is limiting food intake, is recognized in mammals as the best characterized and most reproducible ...
    • Macroautophagy, organism-specific biosystem (from REACTOME)
      Macroautophagy, organism-specific biosystemMacroautophagy (hereafter referred to as autophagy) acts as a buffer against starvation by liberating building materials and energy sources from cellular components. It has additional roles in embryo...
    • PI3K-AKT-mTOR signaling pathway and therapeutic opportunities, organism-specific biosystem (from WikiPathways)
      PI3K-AKT-mTOR signaling pathway and therapeutic opportunities, organism-specific biosystemThis pathway is based on figure 1 from Merritt et al. (See Bibliography). The PI3K-AKT-mTOR signaling pathway has been shown to have a significant correlation with the development of castration-resis...
    • Senescence and Autophagy in Cancer, organism-specific biosystem (from WikiPathways)
      Senescence and Autophagy in Cancer, organism-specific biosystemSenescense and Autophagy Pathways in Cancer
    • mTOR signaling pathway, organism-specific biosystem (from Pathway Interaction Database)
      mTOR signaling pathway, organism-specific biosystem
      mTOR signaling pathway
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • FLJ20698, KIAA0652

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    autophagosome assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    macroautophagy TAS
    Traceable Author Statement
    more info
     
    macromitophagy IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of protein targeting to mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of macroautophagy TAS
    Traceable Author Statement
    more info
     
    response to mitochondrial depolarisation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    ATG1/ULK1 kinase complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    endoplasmic reticulum membrane TAS
    Traceable Author Statement
    more info
     
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    pre-autophagosomal structure IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    pre-autophagosomal structure ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    autophagy-related protein 13
    Names
    ATG13 autophagy related 13 homolog

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_051811.1 RefSeqGene

      Range
      5001..63742
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001142673.2NP_001136145.1  autophagy-related protein 13 isoform c

      See identical proteins and their annotated locations for NP_001136145.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) includes an alternate exon in the 5' UTR and lacks an exon in the coding region compared to variant 3. The resulting isoform (c, also known as isoform 1) is shorter but has the same N- and C- termini compared to isoform a. Variants 1, 4 and 15-28 all encode the same isoform (c).
      Source sequence(s)
      AC115088, AK289641, BC002378, CD675643, DA195671
      Consensus CDS
      CCDS44582.1
      UniProtKB/Swiss-Prot
      O75143
      UniProtKB/TrEMBL
      A8K0S6
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    2. NM_001205119.1NP_001192048.1  autophagy-related protein 13 isoform a

      See identical proteins and their annotated locations for NP_001192048.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) encodes the longest isoform (a, also known as isoform 3). Variants 3 and 7-12 all encode the same isoform (a).
      Source sequence(s)
      AC115088, AK223603, BC002378, DA195671
      Consensus CDS
      CCDS55760.1
      UniProtKB/Swiss-Prot
      O75143
      Related
      ENSP00000432412.1, OTTHUMP00000233326, ENST00000528494.5, OTTHUMT00000390301
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    3. NM_001205120.1NP_001192049.1  autophagy-related protein 13 isoform c

      See identical proteins and their annotated locations for NP_001192049.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) lacks an exon in the coding region compared to variant 3. The resulting isoform (c, also known as isoform 1) is shorter but has the same N- and C-termini compared to isoform a. Variants 1, 4, and 15-28 all encode the same isoform (c).
      Source sequence(s)
      AB014552, AC115088, DA195671
      Consensus CDS
      CCDS44582.1
      UniProtKB/Swiss-Prot
      O75143
      Related
      ENSP00000352500.4, OTTHUMP00000233325, ENST00000359513.8, OTTHUMT00000390300
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    4. NM_001205121.1NP_001192050.1  autophagy-related protein 13 isoform f

      See identical proteins and their annotated locations for NP_001192050.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) includes an alternate exon in the 5' UTR and lacks two exons in the coding region compared to variant 3. The resulting isoform (f, also known as isoform 2) is shorter but has the same N- and C- termini compared to isoform a. Variants 2, 5, and 36-45 all encode the same isoform (f).
      Source sequence(s)
      AB014552, AC115088, AK023867, DA195671
      Consensus CDS
      CCDS7921.1
      UniProtKB/Swiss-Prot
      O75143
      Related
      ENSP00000433756.1, OTTHUMP00000233321, ENST00000529655.5, OTTHUMT00000390295
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    5. NM_001205122.1NP_001192051.1  autophagy-related protein 13 isoform h

      See identical proteins and their annotated locations for NP_001192051.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6) has multiple differences compared to variant 3. These differences result in a distinct 5' UTR and cause translation initiation at a downstream start codon compared to variant 3. The encoded isoform (h, also known as isoform 4) has a distinct N-terminus and is shorter than isoform a.
      Source sequence(s)
      AB014552, AC115088, AK294110, DA195671
      Consensus CDS
      CCDS55761.1
      UniProtKB/Swiss-Prot
      O75143
      Related
      ENSP00000434390.1, OTTHUMP00000233322, ENST00000530500.5, OTTHUMT00000390296
    6. NM_001346311.1NP_001333240.1  autophagy-related protein 13 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (7), as well as variants 3 and 8-12, encodes isoform a.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    7. NM_001346312.1NP_001333241.1  autophagy-related protein 13 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (8), as well as variants 3, 7, and 9-12, encodes isoform a
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    8. NM_001346313.1NP_001333242.1  autophagy-related protein 13 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (9), as well as variants 3, 7-8, and 10-12, encodes isoform a.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    9. NM_001346314.1NP_001333243.1  autophagy-related protein 13 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (10), as well as variants 3, 7-9, and 11-12, encodes isoform a.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    10. NM_001346315.1NP_001333244.1  autophagy-related protein 13 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (11), as well as variants 3, 7-10, and 12, encodes isoform a.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    11. NM_001346316.1NP_001333245.1  autophagy-related protein 13 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (12), as well as variants 3 and 7-11, encodes isoform a.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    12. NM_001346317.1NP_001333246.1  autophagy-related protein 13 isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (13), as well as variant 14, encodes isoform b.
      Source sequence(s)
      AC115088, AC127035
    13. NM_001346318.1NP_001333247.1  autophagy-related protein 13 isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (14), as well as variant 13, encodes isoform b.
      Source sequence(s)
      AC115088, AC127035
    14. NM_001346319.1NP_001333248.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (15), as well as variants 1, 4, and 16-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    15. NM_001346320.1NP_001333249.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (16), as well as variants 1, 4, 15, and 17-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    16. NM_001346321.1NP_001333250.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (17), as well as variants 1, 4, 15-16, and 18-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    17. NM_001346322.1NP_001333251.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (18), as well as variants 1, 4, 15-17, and 19-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    18. NM_001346323.1NP_001333252.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (19), as well as variants 1, 4, 15-18, and 20-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    19. NM_001346324.1NP_001333253.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (20), as well as variants 1, 4, 15-19, and 21-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    20. NM_001346325.1NP_001333254.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (21), as well as variants 1, 4, 15-20, and 22-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    21. NM_001346326.1NP_001333255.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (22), as well as variants 1, 4, 15-21, and 23-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    22. NM_001346327.1NP_001333256.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (23), as well as variants 1, 4, 15-22, and 24-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    23. NM_001346328.1NP_001333257.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (24), as well as variants 1, 4, 15-23, and 25-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    24. NM_001346329.1NP_001333258.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (25), as well as variants 1, 4, 15-24, and 26-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    25. NM_001346330.1NP_001333259.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (26), as well as variants 1, 4, 15-25, and 27-28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    26. NM_001346331.1NP_001333260.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (27), as well as variants 1, 4, 15-26, and 28, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    27. NM_001346332.1NP_001333261.1  autophagy-related protein 13 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (28), as well as variants 1, 4, and 15-27, encodes isoform c.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    28. NM_001346333.1NP_001333262.1  autophagy-related protein 13 isoform d

      Status: REVIEWED

      Description
      Transcript Variant: This variant (29), as well as variants 30-33, encodes isoform d.
      Source sequence(s)
      AC115088, AC127035
    29. NM_001346334.1NP_001333263.1  autophagy-related protein 13 isoform d

      Status: REVIEWED

      Description
      Transcript Variant: This variant (30), as well as variants 29 and 31-33, encodes isoform d.
      Source sequence(s)
      AC115088, AC127035
    30. NM_001346335.1NP_001333264.1  autophagy-related protein 13 isoform d

      Status: REVIEWED

      Description
      Transcript Variant: This variant (31), as well as variants 29-30 and 32-33, encodes isoform d.
      Source sequence(s)
      AC115088, AC127035
    31. NM_001346336.1NP_001333265.1  autophagy-related protein 13 isoform d

      Status: REVIEWED

      Description
      Transcript Variant: This variant (32), as well as variants 29-31 and 33, encodes isoform d.
      Source sequence(s)
      AC115088, AC127035
    32. NM_001346337.1NP_001333266.1  autophagy-related protein 13 isoform d

      Status: REVIEWED

      Description
      Transcript Variant: This variant (33), as well as variants 29-32, encodes isoform d.
      Source sequence(s)
      AC115088, AC127035
    33. NM_001346338.1NP_001333267.1  autophagy-related protein 13 isoform e

      Status: REVIEWED

      Description
      Transcript Variant: This variant (34), as well as variant 35, encodes isoform e.
      Source sequence(s)
      AC115088, AC127035
    34. NM_001346340.1NP_001333269.1  autophagy-related protein 13 isoform e

      Status: REVIEWED

      Description
      Transcript Variant: This variant (35), as well as variant 34, encodes isoform e.
      Source sequence(s)
      AC115088, AC127035
    35. NM_001346342.1NP_001333271.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (36), as well as variants 2, 5, and 37-45, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    36. NM_001346344.1NP_001333273.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (37), as well as variants 2, 5, 36, and 38-45, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    37. NM_001346346.1NP_001333275.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (38), as well as variants 2, 5, 36-37, and 39-45, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    38. NM_001346348.1NP_001333277.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (39), as well as variants 2, 5, 36-38, and 40-45, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    39. NM_001346349.1NP_001333278.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (40), as well as variants 2, 5, 36-39, and 41-45, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    40. NM_001346350.1NP_001333279.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (41), as well as variants 2, 5, 36-40, and 42-45, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    41. NM_001346351.1NP_001333280.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (42), as well as variants 2, 5, 36-41, and 43-45, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    42. NM_001346352.1NP_001333281.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (43), as well as variants 2, 5, 36-42, and 44-45, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    43. NM_001346353.1NP_001333282.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (44), as well as variants 2, 5, 36-43, and 45, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    44. NM_001346354.1NP_001333283.1  autophagy-related protein 13 isoform f

      Status: REVIEWED

      Description
      Transcript Variant: This variant (45), as well as variants 2, 5, and 36-44, encodes isoform f.
      Source sequence(s)
      AC115088, AC127035
      UniProtKB/Swiss-Prot
      O75143
    45. NM_001346355.1NP_001333284.1  autophagy-related protein 13 isoform g

      Status: REVIEWED

      Description
      Transcript Variant: This variant (46), as well as variant 47, encodes isoform g.
      Source sequence(s)
      AC115088, AC127035
    46. NM_001346356.1NP_001333285.1  autophagy-related protein 13 isoform g

      Status: REVIEWED

      Description
      Transcript Variant: This variant (47), as well as variant 46, encodes isoform g.
      Source sequence(s)
      AC115088, AC127035
    47. NM_001346357.1NP_001333286.1  autophagy-related protein 13 isoform i

      Status: REVIEWED

      Description
      Transcript Variant: This variant (48), as well as variants 49 and 50, encodes isoform i.
      Source sequence(s)
      AC115088, AC127035
    48. NM_001346358.1NP_001333287.1  autophagy-related protein 13 isoform i

      Status: REVIEWED

      Description
      Transcript Variant: This variant (49), as well as variants 48 and 50, encodes isoform i.
      Source sequence(s)
      AC115088, AC127035
    49. NM_001346359.1NP_001333288.1  autophagy-related protein 13 isoform i

      Status: REVIEWED

      Description
      Transcript Variant: This variant (50), as well as variants 48 and 49, encodes isoform i.
      Source sequence(s)
      AC115088, AC127035
    50. NM_001346360.1NP_001333289.1  autophagy-related protein 13 isoform j

      Status: REVIEWED

      Description
      Transcript Variant: This variant (51) encodes isoform j.
      Source sequence(s)
      AC115088, AC127035
    51. NM_014741.4NP_055556.2  autophagy-related protein 13 isoform f

      See identical proteins and their annotated locations for NP_055556.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) includes an alternate exon in the 5' UTR and lacks two exons in the coding region compared to variant 3. The resulting isoform (f, also known as isoform 2) is shorter but has the same N- and C- termini compared to isoform a. Variants 2, 5, and 36-45 all encode the same isoform (f).
      Source sequence(s)
      AC115088, BC002378, DA195671
      Consensus CDS
      CCDS7921.1
      UniProtKB/Swiss-Prot
      O75143
      Related
      ENSP00000433543.1, OTTHUMP00000233324, ENST00000524625.5, OTTHUMT00000390298
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13

    RNA

    1. NR_144422.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC115088, AC127035
    2. NR_144423.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC115088, AC127035
    3. NR_144424.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC115088, AC127035

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p7 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p7 Primary Assembly

      Range
      46617276..46676019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017018603.1XP_016874092.1  autophagy-related protein 13 isoform X3

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    2. XM_005253265.2XP_005253322.1  autophagy-related protein 13 isoform X1

      See identical proteins and their annotated locations for XP_005253322.1

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    3. XM_017018602.1XP_016874091.1  autophagy-related protein 13 isoform X3

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    4. XM_017018612.1XP_016874101.1  autophagy-related protein 13 isoform X5

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    5. XM_017018599.1XP_016874088.1  autophagy-related protein 13 isoform X1

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    6. XM_006718396.2XP_006718459.1  autophagy-related protein 13 isoform X1

      See identical proteins and their annotated locations for XP_006718459.1

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    7. XM_017018615.1XP_016874104.1  autophagy-related protein 13 isoform X5

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    8. XM_017018617.1XP_016874106.1  autophagy-related protein 13 isoform X5

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    9. XM_017018622.1XP_016874111.1  autophagy-related protein 13 isoform X8

    10. XM_011520493.1XP_011518795.1  autophagy-related protein 13 isoform X1

      See identical proteins and their annotated locations for XP_011518795.1

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    11. XM_017018618.1XP_016874107.1  autophagy-related protein 13 isoform X6

    12. XM_006718394.2XP_006718457.1  autophagy-related protein 13 isoform X1

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    13. XM_011520500.1XP_011518802.1  autophagy-related protein 13 isoform X2

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    14. XM_011520501.1XP_011518803.1  autophagy-related protein 13 isoform X3

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    15. XM_011520502.1XP_011518804.1  autophagy-related protein 13 isoform X4

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    16. XM_011520503.1XP_011518805.1  autophagy-related protein 13 isoform X5

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    17. XM_017018620.1XP_016874109.1  autophagy-related protein 13 isoform X7

    18. XM_005253263.2XP_005253320.1  autophagy-related protein 13 isoform X1

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    19. XM_017018604.1XP_016874093.1  autophagy-related protein 13 isoform X3

      Related
      ENSP00000431974.1, OTTHUMP00000233323, ENST00000526508.5, OTTHUMT00000390297
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    20. XM_017018609.1XP_016874098.1  autophagy-related protein 13 isoform X4

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    21. XM_017018613.1XP_016874102.1  autophagy-related protein 13 isoform X5

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    22. XM_006718395.2XP_006718458.1  autophagy-related protein 13 isoform X1

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    23. XM_017018605.1XP_016874094.1  autophagy-related protein 13 isoform X3

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    24. XM_017018614.1XP_016874103.1  autophagy-related protein 13 isoform X5

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    25. XM_005253266.2XP_005253323.1  autophagy-related protein 13 isoform X1

      See identical proteins and their annotated locations for XP_005253323.1

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    26. XM_017018606.1XP_016874095.1  autophagy-related protein 13 isoform X3

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    27. XM_017018611.1XP_016874100.1  autophagy-related protein 13 isoform X4

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    28. XM_017018619.1XP_016874108.1  autophagy-related protein 13 isoform X7

    29. XM_017018621.1XP_016874110.1  autophagy-related protein 13 isoform X7

    30. XM_017018601.1XP_016874090.1  autophagy-related protein 13 isoform X2

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    31. XM_017018610.1XP_016874099.1  autophagy-related protein 13 isoform X4

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    32. XM_017018616.1XP_016874105.1  autophagy-related protein 13 isoform X5

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    33. XM_005253262.2XP_005253319.1  autophagy-related protein 13 isoform X1

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    34. XM_017018600.1XP_016874089.1  autophagy-related protein 13 isoform X2

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    35. XM_017018608.1XP_016874097.1  autophagy-related protein 13 isoform X4

      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    36. XM_005253268.2XP_005253325.1  autophagy-related protein 13 isoform X1

      See identical proteins and their annotated locations for XP_005253325.1

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    37. XM_017018607.1XP_016874096.1  autophagy-related protein 13 isoform X3

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    38. XM_011520496.2XP_011518798.1  autophagy-related protein 13 isoform X1

      See identical proteins and their annotated locations for XP_011518798.1

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13
    39. XM_011520499.2XP_011518801.1  autophagy-related protein 13 isoform X1

      See identical proteins and their annotated locations for XP_011518801.1

      UniProtKB/Swiss-Prot
      O75143
      Conserved Domains (1) summary
      pfam10033
      Location:19195
      ATG13; Autophagy-related protein 13

    Alternate CHM1_1.1

    Genomic

    1. NC_018922.2 Alternate CHM1_1.1

      Range
      46637238..46695980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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