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    C2cd3 C2 calcium-dependent domain containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 277939, updated on 25-May-2017
    Official Symbol
    C2cd3provided by MGI
    Official Full Name
    C2 calcium-dependent domain containing 3provided by MGI
    Primary source
    MGI:MGI:2142166
    See related
    Ensembl:ENSMUSG00000047248 Vega:OTTMUSG00000031837
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU020772
    Orthologs
    Location:
    7; 7 E2
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (100372233..100470159)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (107520743..107618668)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III Neighboring gene protein phosphatase methylesterase 1 Neighboring gene predicted gene 10603 Neighboring gene uncoupling protein 3 (mitochondrial, proton carrier) Neighboring gene uncoupling protein 2 (mitochondrial, proton carrier)

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    brain development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    centriole elongation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    centriole elongation ISO
    Inferred from Sequence Orthology
    more info
     
    cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic digit morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic limb morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    heart looping IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    in utero embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neural plate axis specification IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    neural tube development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    non-motile cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    pattern specification process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein localization to centrosome IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein localization to centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    protein processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of proteolysis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of smoothened signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    regulation of smoothened signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    centriolar satellite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    centriolar satellite ISO
    Inferred from Sequence Orthology
    more info
     
    centriole IDA
    Inferred from Direct Assay
    more info
    PubMed 
    centriole ISO
    Inferred from Sequence Orthology
    more info
     
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    ciliary basal body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cilium IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    C2 domain-containing protein 3
    Names
    protein hearty

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017985.2NP_001017985.2  C2 domain-containing protein 3

      See identical proteins and their annotated locations for NP_001017985.2

      Status: VALIDATED

      Source sequence(s)
      AK047412, BC094430, BG073635, BY300398, CJ173453
      Consensus CDS
      CCDS57568.1
      UniProtKB/Swiss-Prot
      Q52KB6
      Related
      ENSMUSP00000062637.7, OTTMUSP00000042045, ENSMUST00000051777.14, OTTMUST00000078942
      Conserved Domains (2) summary
      cd00030
      Location:16601728
      C2; C2 domain
      cd08683
      Location:11831325
      C2_C2cd3; C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      100372233..100470159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011241827.2XP_011240129.1  C2 domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_011240129.1

      Conserved Domains (2) summary
      cd00030
      Location:14541522
      C2; C2 domain
      cd08683
      Location:9771119
      C2_C2cd3; C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins
    2. XM_006507908.3XP_006507971.1  C2 domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006507971.1

      Conserved Domains (2) summary
      cd00030
      Location:14541522
      C2; C2 domain
      cd08683
      Location:9771119
      C2_C2cd3; C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins
    3. XM_011241828.2XP_011240130.1  C2 domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_011240130.1

      Conserved Domains (2) summary
      cd00030
      Location:14541522
      C2; C2 domain
      cd08683
      Location:9771119
      C2_C2cd3; C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins
    4. XM_006507910.2XP_006507973.1  C2 domain-containing protein 3 isoform X2

      Conserved Domains (2) summary
      cd00030
      Location:11971265
      C2; C2 domain
      cd08683
      Location:720862
      C2_C2cd3; C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

    RNA

    1. XR_001785566.1 RNA Sequence

    2. XR_378248.1 RNA Sequence

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