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    elp3 elongator acetyltransferase complex subunit 3 [ Danio rerio (zebrafish) ]

    Gene ID: 541509, updated on 16-Apr-2017
    Official Symbol
    elp3provided by ZNC
    Official Full Name
    elongator acetyltransferase complex subunit 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050327-35
    See related
    Ensembl:ENSDARG00000042005 Vega:OTTDARG00000005850
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:113140; si:ch211-63o20.8
    Orthologs
    Location:
    chromosome: 20
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 20 NC_007131.6 (34768517..34797775)
    103 previous assembly Zv9 (GCF_000002035.4) 20 NC_007131.5 (34696004..34725262)

    Chromosome 20 - NC_007131.6Genomic Context describing neighboring genes Neighboring gene si:ch211-63o20.10 Neighboring gene solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 Neighboring gene si:ch211-63o20.7 Neighboring gene prepronociceptin b

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    N-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    iron-sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphorylase kinase regulator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring acyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    axonogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription from RNA polymerase II promoter ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription elongation factor complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    elongator complex protein 3
    Names
    elongation protein 3 homolog
    NP_001014344.2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014322.2NP_001014344.2  elongator complex protein 3

      See identical proteins and their annotated locations for NP_001014344.2

      Status: PROVISIONAL

      Source sequence(s)
      BC096810
      UniProtKB/Swiss-Prot
      Q5RIC0
      UniProtKB/TrEMBL
      B2GS73
      Related
      ENSDARP00000113240.2, OTTDARP00000005704, ENSDART00000138226.2, OTTDART00000006411
      Conserved Domains (4) summary
      cd01335
      Location:97334
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
      TIGR01211
      Location:37547
      ELP3; radical SAM enzyme/protein acetyltransferase, ELP3 family
      pfam00583
      Location:444537
      Acetyltransf_1; Acetyltransferase (GNAT) family
      pfam16199
      Location:315393
      Radical_SAM_C; Radical_SAM C-terminal domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007131.6 Reference GRCz10 Primary Assembly

      Range
      34768517..34797775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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