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    Rrp1b ribosomal RNA processing 1 homolog B (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 72462, updated on 12-Mar-2017
    Official Symbol
    Rrp1bprovided by MGI
    Official Full Name
    ribosomal RNA processing 1 homolog B (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:1919712
    See related
    Ensembl:ENSMUSG00000058392 Vega:OTTMUSG00000031369
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kiaa0179; mKIAA0179; D030064A17; 2600005C20Rik
    Orthologs
    Location:
    17; 17 B1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (32036162..32062865)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (32173107..32199807)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2310015A16 gene Neighboring gene predicted gene, 30571 Neighboring gene heat shock transcription factor 2 binding protein Neighboring gene pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene Neighboring gene predicted gene, 30729

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    negative regulation of phosphatase activity ISO
    Inferred from Sequence Orthology
    more info
     
    rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    euchromatin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    heterochromatin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    preribosome, small subunit precursor IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    ribosomal RNA processing protein 1 homolog B
    Names
    RRP1-like protein B

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163734.1NP_001157206.1  ribosomal RNA processing protein 1 homolog B isoform 2

      See identical proteins and their annotated locations for NP_001157206.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      CT033797
      Conserved Domains (1) summary
      pfam05997
      Location:1117
      Nop52; Nucleolar protein,Nop52
    2. NM_028244.2NP_082520.2  ribosomal RNA processing protein 1 homolog B isoform 1

      See identical proteins and their annotated locations for NP_082520.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      CT033797
      Consensus CDS
      CCDS28613.1
      UniProtKB/Swiss-Prot
      Q91YK2
      Related
      ENSMUSP00000080085, OTTMUSP00000041177, ENSMUST00000081339, OTTMUST00000077727
      Conserved Domains (1) summary
      pfam05997
      Location:11218
      Nop52; Nucleolar protein,Nop52

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      32036162..32062865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524973.2XP_006525036.1  ribosomal RNA processing protein 1 homolog B isoform X3

      Conserved Domains (1) summary
      pfam05997
      Location:11218
      Nop52; Nucleolar protein,Nop52
    2. XM_006524971.1XP_006525034.1  ribosomal RNA processing protein 1 homolog B isoform X1

      Conserved Domains (1) summary
      pfam05997
      Location:2148
      Nop52; Nucleolar protein,Nop52
    3. XM_006524972.1XP_006525035.1  ribosomal RNA processing protein 1 homolog B isoform X2

      See identical proteins and their annotated locations for XP_006525035.1

      Conserved Domains (1) summary
      pfam05997
      Location:1117
      Nop52; Nucleolar protein,Nop52
    4. XM_006524974.1XP_006525037.1  ribosomal RNA processing protein 1 homolog B isoform X4

      Conserved Domains (1) summary
      pfam06070
      Location:89405
      Herpes_UL32; Herpesvirus large structural phosphoprotein UL32

    RNA

    1. XR_001782117.1 RNA Sequence

      Related
      ENSMUST00000147076
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