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    tfec transcription factor EC [ Danio rerio (zebrafish) ]

    Gene ID: 556894, updated on 26-Nov-2017
    Official Symbol
    tfecprovided by ZNC
    Official Full Name
    transcription factor ECprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041210-21
    See related
    Ensembl:ENSDARG00000098745
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    si:ch211-238e6.5
    Orthologs
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (6011670..6048169)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (5971642..6039599)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101885813 Neighboring gene uncharacterized LOC101885859 Neighboring gene uncharacterized LOC101885896 Neighboring gene uncharacterized LOC108183538

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    definitive hemopoiesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hematopoietic stem cell homeostasis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    hematopoietic stem cell homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hematopoietic stem cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hemopoiesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030105.2NP_001025276.2  transcription factor EC

      See identical proteins and their annotated locations for NP_001025276.2

      Status: PROVISIONAL

      Source sequence(s)
      BC116471
      UniProtKB/TrEMBL
      Q1JQ62
      Related
      ENSDARP00000131967.1, ENSDART00000164766.1
      Conserved Domains (4) summary
      cd00083
      Location:161221
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      pfam10211
      Location:204251
      Ax_dynein_light; Axonemal dynein light chain
      pfam11851
      Location:249377
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:17109
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      6011670..6048169
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021475033.1XP_021330708.1  transcription factor EC isoform X2

      Conserved Domains (4) summary
      cd00083
      Location:150210
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      pfam11851
      Location:305373
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:998
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cl21462
      Location:206241
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    2. XM_005164535.4XP_005164592.1  transcription factor EC isoform X1

      Conserved Domains (4) summary
      cd00083
      Location:160220
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      pfam11851
      Location:248376
      DUF3371; Domain of unknown function (DUF3371)
      pfam15951
      Location:18108
      MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus
      cl21462
      Location:216251
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    3. XM_017355023.2XP_017210512.1  transcription factor EC isoform X3

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