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    Stim1 stromal interaction molecule 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361618, updated on 2-Jul-2017
    Official Symbol
    Stim1provided by RGD
    Official Full Name
    stromal interaction molecule 1provided by RGD
    Primary source
    RGD:1306831
    See related
    Ensembl:ENSRNOG00000020425 Vega:OTTRNOG00000002203
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs
    Location:
    1q32
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (167373894..167533412)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (173562261..173722026)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S29-like Neighboring gene ras homolog family member G Neighboring gene ribosome biogenesis protein NSA2 homolog pseudogene Neighboring gene ribonucleotide reductase catalytic subunit M1 Neighboring gene olfactory receptor 38, pseudogene

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    calcium channel regulator activity IEA
    Inferred from Electronic Annotation
    more info
     
    calcium channel regulator activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    calcium channel regulator activity ISO
    Inferred from Sequence Orthology
    more info
     
    calcium channel regulator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    calcium ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    calcium ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    microtubule plus-end binding ISO
    Inferred from Sequence Orthology
    more info
     
    microtubule plus-end binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protease binding ISO
    Inferred from Sequence Orthology
    more info
     
    store-operated calcium channel activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    activation of store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    activation of store-operated calcium channel activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    activation of store-operated calcium channel activity ISO
    Inferred from Sequence Orthology
    more info
     
    activation of store-operated calcium channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    cation transport ISO
    Inferred from Sequence Orthology
    more info
     
    cellular calcium ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    detection of calcium ion ISO
    Inferred from Sequence Orthology
    more info
     
    detection of calcium ion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enamel mineralization ISO
    Inferred from Sequence Orthology
    more info
     
    enamel mineralization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    myotube differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    myotube differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of calcium ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of calcium ion transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of store-operated calcium entry IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of store-operated calcium entry ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of store-operated calcium entry ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    store-operated calcium entry IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    store-operated calcium entry ISO
    Inferred from Sequence Orthology
    more info
     
    store-operated calcium entry ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    cortical endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    growth cone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of endoplasmic reticulum membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    integral component of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    microtubule IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein complex IEA
    Inferred from Electronic Annotation
    more info
     
    protein complex ISO
    Inferred from Sequence Orthology
    more info
     
    sarcoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    sarcoplasmic reticulum membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    stromal interaction molecule 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108496.2NP_001101966.2  stromal interaction molecule 1 precursor

      See identical proteins and their annotated locations for NP_001101966.2

      Status: PROVISIONAL

      Source sequence(s)
      CH473956
      UniProtKB/Swiss-Prot
      P84903
      Related
      ENSRNOP00000027685.4, OTTRNOP00000002136, ENSRNOT00000027685.5, OTTRNOT00000003723
      Conserved Domains (4) summary
      cd09573
      Location:128201
      SAM_STIM1; SAM domain of STIM1 subfamily proteins
      smart00454
      Location:129193
      SAM; Sterile alpha motif
      pfam06273
      Location:271336
      eIF-4B; Plant specific eukaryotic initiation factor 4B
      pfam16533
      Location:344441
      SOAR; STIM1 Orai1-activating region

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      167373894..167533412
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      154724106..154885972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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