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    Trrap transformation/transcription domain-associated protein [ Mus musculus (house mouse) ]

    Gene ID: 100683, updated on 9-Jul-2017
    Official Symbol
    Trrapprovided by MGI
    Official Full Name
    transformation/transcription domain-associated proteinprovided by MGI
    Primary source
    MGI:MGI:2153272
    See related
    Ensembl:ENSMUSG00000045482 Vega:OTTMUSG00000017164
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI481500
    Orthologs
    Location:
    5; 5 G2
    Exon count:
    76
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (144767738..144859778)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (145529661..145620642)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene transmembrane protein 130 Neighboring gene predicted gene, 38739 Neighboring gene SMAD specific E3 ubiquitin protein ligase 1 Neighboring gene microRNA 7039 Neighboring gene predicted gene, 33821

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    chromatin binding ISO
    Inferred from Sequence Orthology
    more info
     
    kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transcription coactivator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription cofactor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    DNA repair IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    covalent chromatin modification IEA
    Inferred from Electronic Annotation
    more info
     
    histone H2A acetylation ISO
    Inferred from Sequence Orthology
    more info
     
    histone H4 acetylation ISO
    Inferred from Sequence Orthology
    more info
     
    histone acetylation IEA
    Inferred from Electronic Annotation
    more info
     
    histone deubiquitination ISO
    Inferred from Sequence Orthology
    more info
     
    mitotic cell cycle checkpoint IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    NuA4 histone acetyltransferase complex ISO
    Inferred from Sequence Orthology
    more info
     
    STAGA complex ISO
    Inferred from Sequence Orthology
    more info
     
    Swr1 complex ISO
    Inferred from Sequence Orthology
    more info
     
    histone acetyltransferase complex TAS
    Traceable Author Statement
    more info
    PubMed 
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor TFTC complex ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    transformation/transcription domain-associated protein
    Names
    tra1 homolog
    transactivation/transformation-domain associated protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081362.1NP_001074831.1  transformation/transcription domain-associated protein

      Status: PROVISIONAL

      Source sequence(s)
      AC113295, AC131728
      Consensus CDS
      CCDS39379.1
      UniProtKB/TrEMBL
      E9QLK7
      Related
      ENSMUSP00000098035.3, OTTMUSP00000018666, ENSMUST00000100467.9, OTTMUST00000041548
      Conserved Domains (3) summary
      cd05163
      Location:34843771
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28323174
      FAT; FAT domain
      pfam02260
      Location:38203847
      FATC; FATC domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      144767738..144859778
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504781.2XP_006504844.1  transformation/transcription domain-associated protein isoform X1

      See identical proteins and their annotated locations for XP_006504844.1

      Conserved Domains (3) summary
      cd05163
      Location:35223835
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583211
      FAT; FAT domain
      pfam02260
      Location:38843911
      FATC; FATC domain
    2. XM_006504789.2XP_006504852.1  transformation/transcription domain-associated protein isoform X9

      Conserved Domains (3) summary
      cd05163
      Location:35223809
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583211
      FAT; FAT domain
      pfam02260
      Location:38583885
      FATC; FATC domain
    3. XM_006504787.2XP_006504850.1  transformation/transcription domain-associated protein isoform X7

      Conserved Domains (3) summary
      cd05163
      Location:35043817
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583211
      FAT; FAT domain
      pfam02260
      Location:38663893
      FATC; FATC domain
    4. XM_006504784.2XP_006504847.1  transformation/transcription domain-associated protein isoform X2

      Conserved Domains (3) summary
      cd05163
      Location:35213834
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583211
      FAT; FAT domain
      pfam02260
      Location:38833910
      FATC; FATC domain
    5. XM_006504790.2XP_006504853.1  transformation/transcription domain-associated protein isoform X10

      Conserved Domains (3) summary
      cd05163
      Location:35213808
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583211
      FAT; FAT domain
      pfam02260
      Location:38573884
      FATC; FATC domain
    6. XM_006504793.2XP_006504856.1  transformation/transcription domain-associated protein isoform X13

      Related
      ENSMUSP00000148419.1, OTTMUSP00000078372, ENSMUST00000213013.1, OTTMUST00000151130
      Conserved Domains (3) summary
      cd05163
      Location:35033790
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583211
      FAT; FAT domain
      pfam02260
      Location:38393866
      FATC; FATC domain
    7. XM_006504786.2XP_006504849.1  transformation/transcription domain-associated protein isoform X4

      Conserved Domains (3) summary
      cd05163
      Location:35113824
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583200
      FAT; FAT domain
      pfam02260
      Location:38733900
      FATC; FATC domain
    8. XM_017320576.1XP_017176065.1  transformation/transcription domain-associated protein isoform X11

    9. XM_017320575.1XP_017176064.1  transformation/transcription domain-associated protein isoform X5

    10. XM_006504792.2XP_006504855.1  transformation/transcription domain-associated protein isoform X12

      Related
      ENSMUSP00000122021.1, OTTMUSP00000018667, ENSMUST00000132925.1, OTTMUST00000041551
      Conserved Domains (3) summary
      cd05163
      Location:35103797
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583200
      FAT; FAT domain
      pfam02260
      Location:38463873
      FATC; FATC domain
    11. XM_017320577.1XP_017176066.1  transformation/transcription domain-associated protein isoform X14

    12. XM_011240999.2XP_011239301.1  transformation/transcription domain-associated protein isoform X6

      Conserved Domains (3) summary
      cd05163
      Location:35043817
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28403193
      FAT; FAT domain
      pfam02260
      Location:38663893
      FATC; FATC domain
    13. XM_006504788.2XP_006504851.1  transformation/transcription domain-associated protein isoform X8

      Conserved Domains (3) summary
      cd05163
      Location:34973810
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28333186
      FAT; FAT domain
      pfam02260
      Location:38593886
      FATC; FATC domain
    14. XM_006504794.2XP_006504857.1  transformation/transcription domain-associated protein isoform X15

      Conserved Domains (3) summary
      cd05163
      Location:34853772
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28333175
      FAT; FAT domain
      pfam02260
      Location:38213848
      FATC; FATC domain
    15. XM_006504795.2XP_006504858.1  transformation/transcription domain-associated protein isoform X17

      Conserved Domains (3) summary
      cd05163
      Location:34673754
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28333175
      FAT; FAT domain
      pfam02260
      Location:38033830
      FATC; FATC domain
    16. XM_006504785.2XP_006504848.1  transformation/transcription domain-associated protein isoform X3

      Conserved Domains (3) summary
      cd05163
      Location:35213834
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28573210
      FAT; FAT domain
      pfam02260
      Location:38833910
      FATC; FATC domain
    17. XM_017320578.1XP_017176067.1  transformation/transcription domain-associated protein isoform X16

      UniProtKB/TrEMBL
      E9QLK7
      Conserved Domains (3) summary
      cd05163
      Location:34843771
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28323174
      FAT; FAT domain
      pfam02260
      Location:38203847
      FATC; FATC domain
    18. XM_006504782.2XP_006504845.1  transformation/transcription domain-associated protein isoform X1

      See identical proteins and their annotated locations for XP_006504845.1

      Conserved Domains (3) summary
      cd05163
      Location:35223835
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583211
      FAT; FAT domain
      pfam02260
      Location:38843911
      FATC; FATC domain
    19. XM_006504783.3XP_006504846.1  transformation/transcription domain-associated protein isoform X1

      See identical proteins and their annotated locations for XP_006504846.1

      Conserved Domains (3) summary
      cd05163
      Location:35223835
      PIKK_TRRAP; Pseudokinase domain of TRansformation/tRanscription domain-Associated Protein
      pfam02259
      Location:28583211
      FAT; FAT domain
      pfam02260
      Location:38843911
      FATC; FATC domain

    RNA

    1. XR_377189.3 RNA Sequence

    2. XR_377190.2 RNA Sequence

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