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    TSPYL1 TSPY like 1 [ Homo sapiens (human) ]

    Gene ID: 7259, updated on 3-Sep-2017
    Official Symbol
    TSPYL1provided by HGNC
    Official Full Name
    TSPY like 1provided by HGNC
    Primary source
    HGNC:HGNC:12382
    See related
    Ensembl:ENSG00000189241 MIM:604714; Vega:OTTHUMG00000015427
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TSPYL
    Summary
    The protein encoded by this gene is found in the nucleolus and is similar to that of a family of genes on the Y-chromosome. This gene is intronless. Defects in this gene are a cause of sudden infant death with dysgenesis of the testes syndrome (SIDDT). [provided by RefSeq, Dec 2009]
    Orthologs
    Location:
    6q22.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    108 current GRCh38.p7 (GCF_000001405.33) 6 NC_000006.12 (116274859..116280117, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (116596022..116601280, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S5 pseudogene Neighboring gene TSPY like 4 Neighboring gene ribosomal protein S5 pseudogene 1 Neighboring gene dermatan sulfate epimerase Neighboring gene uncharacterized LOC100287467 Neighboring gene chromobox 3 pseudogene 9

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Protein interactions

    Protein Gene Interaction Pubs
    Vpr vpr HIV-1 Vpr interacts with TSPYL1 and C20orf94 subunits of the SLX4 complex in Vpr-expressing THP-1 cells PubMed

    Go to the HIV-1, Human Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enzyme binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleolus IDA
    Inferred from Direct Assay
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
     
    Preferred Names
    testis-specific Y-encoded-like protein 1
    Names
    TSPY-like protein 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016217.1 RefSeqGene

      Range
      5001..10259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_862

    mRNA and Protein(s)

    1. NM_003309.3NP_003300.1  testis-specific Y-encoded-like protein 1

      See identical proteins and their annotated locations for NP_003300.1

      Status: REVIEWED

      Source sequence(s)
      AL050331
      Consensus CDS
      CCDS34518.1
      UniProtKB/Swiss-Prot
      Q9H0U9
      Related
      ENSP00000357597.3, OTTHUMP00000017052, ENST00000368608.3, OTTHUMT00000041929
      Conserved Domains (1) summary
      pfam00956
      Location:228409
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p7 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p7 Primary Assembly

      Range
      116274859..116280117 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.1

    Genomic

    1. NC_018917.2 Alternate CHM1_1.1

      Range
      116859915..116865188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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