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    xerD site-specific tyrosine recombinase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947362, updated on 25-Apr-2017
    Gene symbol
    xerD
    Gene description
    site-specific tyrosine recombinase
    Primary source
    EcoGene:EG11071
    Locus tag
    b2894
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2889; JW2862; xprB
    Summary
    XerCD acts at the Dif site. [More information is available at EcoGene: EG11071]. XerD is part of the Xer site-specific recombination system . [More information is available at EcoCyc: EG11071].
    Sequence:
    NC_000913.3 (3038847..3039743, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ssDNA exonuclease, 5' --> 3'-specific Neighboring gene protein disulfide isomerase II Neighboring gene flavodoxin 2 Neighboring gene toxin of CptAB toxin-antitoxin pair Neighboring gene flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    site-specific recombinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    tyrosine-based site-specific recombinase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    plasmid maintenance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    resolution of recombination intermediates IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    Holliday junction resolvase complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3038847..3039743 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417370.1 site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417370.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P0A8P8
      Conserved Domains (3) summary
      PRK00283
      Location:1298
      xerD; site-specific tyrosine recombinase XerD; Reviewed
      cd00798
      Location:115287
      INT_XerDC_C; XerD and XerC integrases, C-terminal catalytic domains
      pfam02899
      Location:890
      Phage_int_SAM_1; Phage integrase, N-terminal SAM-like domain
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