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    chrd.1.S chordin, gene 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398045, updated on 8-Apr-2017
    Official Symbol
    chrd.1.S
    Official Full Name
    chordin, gene 1 S homeolog
    Primary source
    Xenbase:XB-GENE-865395
    Locus tag
    XELAEV_18029538mg
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    chd; chrd; chrd.L; X-chordin
    See chrd.1.S in Genome Data Viewer
    Location:
    chromosome: 5S
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (81693644..81710125)

    Chromosome 5S - NC_030733.1Genomic Context describing neighboring genes Neighboring gene polymerase (RNA) II subunit H S homeolog Neighboring gene thrombopoietin S homeolog Neighboring gene chloride channel, voltage-sensitive 2 S homeolog Neighboring gene protein FAM131A-like

    Genomic Sequence:
    NC_030733.1 Chromosome 5S Reference Xenopus_laevis_v2 Primary Assembly

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • TGF-beta signaling pathway, organism-specific biosystem (from KEGG)
      TGF-beta signaling pathway, organism-specific biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
    • TGF-beta signaling pathway, conserved biosystem (from KEGG)
      TGF-beta signaling pathway, conserved biosystemThe transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species r...
    Preferred Names
    chordin
    Names
    chordin L homeolog
    organizer-specific secreted-dorsalizing factor

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001088309.1NP_001081778.1  chordin precursor

      See identical proteins and their annotated locations for NP_001081778.1

      Status: PROVISIONAL

      Source sequence(s)
      L35764
      UniProtKB/Swiss-Prot
      Q91713
      Conserved Domains (4) summary
      smart00214
      Location:771837
      VWC; von Willebrand factor (vWF) type C domain
      smart00754
      Location:530651
      CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
      pfam00093
      Location:693750
      VWC; von Willebrand factor type C domain
      cl17735
      Location:43116
      VWC; von Willebrand factor type C domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v2 Primary Assembly

    Genomic

    1. NC_030733.1 Reference Xenopus_laevis_v2 Primary Assembly

      Range
      81693644..81710125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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