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    cdh23 cadherin-related 23 [ Danio rerio (zebrafish) ]

    Gene ID: 407978, updated on 27-Aug-2016
    Official Symbol
    cdh23provided by ZNC
    Official Full Name
    cadherin-related 23provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040513-7
    See related
    Ensembl:ENSDARG00000007561
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    Location:
    chromosome: 13
    Exon count:
    72
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 13 NC_007124.6 (42636134..43091249)
    103 previous assembly Zv9 (GCF_000002035.4) 13 NC_007124.5 (43415175..43736648) , (43745592..43876133)

    Chromosome 13 - NC_007124.6Genomic Context describing neighboring genes Neighboring gene calpain 1, (mu/I) large subunit a Neighboring gene calpain 2, (m/II) large subunit a Neighboring gene zgc:153073 Neighboring gene eukaryotic translation initiation factor 3, subunit 6 interacting protein Neighboring gene SPARC related modular calcium binding 2

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    antibiotic transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    auditory receptor cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    cell projection organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    detection of mechanical stimulus involved in sensory perception IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    endocytosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    equilibrioception IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hair cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
     
    inner ear receptor stereocilium organization IEA
    Inferred from Electronic Annotation
    more info
     
    inner ear receptor stereocilium organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    locomotory behavior IEA
    Inferred from Electronic Annotation
    more info
     
    neuromast hair cell morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
     
    sensory perception of sound IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    stereocilium IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    cadherin-23
    Names
    cadherin 23
    cadherin-like 23
    spu
    sputnik
    ush1d

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214809.1NP_999974.1  cadherin-23 precursor

      See identical proteins and their annotated locations for NP_999974.1

      Status: PROVISIONAL

      Source sequence(s)
      AY530192
      UniProtKB/TrEMBL
      Q6QQE1
      Related
      ENSDARP00000026525, ENSDART00000016602
      Conserved Domains (1) summary
      cd11304
      Location:15361633
      Cadherin_repeat; Cadherin tandem repeat domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007124.6 Reference GRCz10 Primary Assembly

      Range
      42636134..43091249
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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