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    cPT5 Undecaprenyl pyrophosphate synthetase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835992, updated on 28-Mar-2017
    Gene symbol
    cPT5
    Gene description
    Undecaprenyl pyrophosphate synthetase family protein
    Primary source
    Araport:AT5G58780
    Locus tag
    AT5G58780
    Gene type
    protein coding
    RNA name
    Undecaprenyl pyrophosphate synthetase family protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtcPT5; AtHEPS; cis -prenyltransferase 5; HEPS; heptaprenyl diphosphate synthase; MZN1.33
    Summary
    Encodes a novel Z,E-mixed heptaprenyl diphosphate (Z,E-HepPP) synthase, which may be responsible for short-chain betulaprenols. It catalyzes the formation of C 35 short-chain polyisoprenoids in which the optimal allylic substrate was E,E-FPP. It may have a role in response to cold stress in root.
    See cPT5 in Map Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (23735620..23737335, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene damaged DNA binding 2 Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Undecaprenyl pyrophosphate synthetase family protein

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    NM_125265.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    polyprenyltransferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    rubber cis-polyprenylcistransferase activity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    polyprenol biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
     
    response to cold IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extracellular region ISM
    Inferred from Sequence Model
    more info
     
    Names
    Undecaprenyl pyrophosphate synthetase family protein
    NP_568882.1
    • Undecaprenyl pyrophosphate synthetase family protein; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: cis-prenyltransferase (TAIR:AT2G23410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23735620..23737335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125265.3NP_568882.1  Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568882.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RX73
      Conserved Domains (1) summary
      cd00475
      Location:73293
      Cis_IPPS; Cis (Z)-Isoprenyl Diphosphate Synthases
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