Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    RIM13 Rim13p [ Saccharomyces cerevisiae S288c ]

    Gene ID: 855186, updated on 25-May-2017
    Gene symbol
    RIM13
    Gene description
    Rim13p
    Primary source
    SGD:S000004763
    Locus tag
    YMR154C
    Gene type
    protein coding
    RNA name
    Rim13p
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    CPL1
    See RIM13 in Map Viewer
    Location:
    chromosome: XIII
    Exon count:
    1
    Sequence:
    Chromosome: XIII; NC_001145.3 (565999..568182, complement)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene Yim1p Neighboring gene FG-nucleoporin NUP53 Neighboring gene hypothetical protein Neighboring gene polynucleotide 3'-phosphatase

    Products Interactant Other Gene Complex Source Pubs Description

    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    cysteine-type endopeptidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cysteine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    protein processing IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    protein processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    proteolysis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    Names
    Rim13p
    NP_013875.1
    • Calpain-like cysteine protease; involved in proteolytic activation of Rim101p in response to alkaline pH; localizes to punctate structures in alkaline conditions and in vps4 mutant; has similarity to A. nidulans palB

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      565999..568182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182657.1NP_013875.1  TPA: Rim13p [Saccharomyces cerevisiae S288c]

      See identical proteins and their annotated locations for NP_013875.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q03792
      Conserved Domains (1) summary
      cl00051
      Location:89315
      CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    Support Center