Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    chd chordin [ Danio rerio (zebrafish) ]

    Gene ID: 30161, updated on 7-May-2017
    Official Symbol
    chdprovided by ZNC
    Official Full Name
    chordinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-990415-33
    See related
    Ensembl:ENSDARG00000006110 Vega:OTTDARG00000035823
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    din; fe47d04; wu:fe47d04
    Orthologs
    Location:
    chromosome: 15
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 15 NC_007126.6 (46557787..46594810, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 15 NC_007126.5 (46136169..46173282, complement)

    Chromosome 15 - NC_007126.6Genomic Context describing neighboring genes Neighboring gene integrin-linked kinase-associated serine/threonine phosphatase Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene chloride channel 2c Neighboring gene uncharacterized LOC101886903 Neighboring gene dynein heavy chain-like

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    Kupffer's vesicle development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    anterior/posterior axis specification IDA
    Inferred from Direct Assay
    more info
    PubMed 
    anterior/posterior axis specification IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    caudal fin morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    determination of heart left/right asymmetry IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    determination of left/right symmetry IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    determination of ventral identity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    determination of ventral identity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    dorsal convergence IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    dorsal/ventral pattern formation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    dorsal/ventral pattern formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic heart tube morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic hemopoiesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    embryonic hemopoiesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    heart looping IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of BMP signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of BMP signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    negative regulation of BMP signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    otic placode formation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    regulation of BMP signaling pathway involved in heart jogging IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    somitogenesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    somitogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    specification of animal organ position IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    chordin
    Names
    chordino
    dino (din)
    protein chordino

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_130973.3NP_571048.2  chordin precursor

      Status: VALIDATED

      Source sequence(s)
      CABZ01044067, CR381579
      UniProtKB/TrEMBL
      F1QKY4
      Related
      ENSDARP00000045109.5, ENSDART00000045110.6

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007126.6 Reference GRCz10 Primary Assembly

      Range
      46557787..46594810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center