Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    bin1b bridging integrator 1b [ Danio rerio (zebrafish) ]

    Gene ID: 447863, updated on 2-Apr-2017
    Official Symbol
    bin1bprovided by ZNC
    Official Full Name
    bridging integrator 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030425-1
    See related
    Ensembl:ENSDARG00000058820 Vega:OTTDARG00000034595
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    bin1; cb57; zgc:86701
    Location:
    chromosome: 6
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 6 NC_007117.6 (6842320..6895434, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 6 NC_007117.5 (6916306..6969410, complement)

    Chromosome 6 - NC_007117.6Genomic Context describing neighboring genes Neighboring gene si:ch211-114n24.6 Neighboring gene tubulin, alpha 8 like 4 Neighboring gene Indian hedgehog homolog b Neighboring gene nonhomologous end-joining factor 1

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    cardiac muscle contraction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    bridging integrator 1b
    Names
    bridging integrator 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004602.2NP_001004602.2  bridging integrator 1b isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks several alternate in-frame exons compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      CU655960, CU659670
      UniProtKB/TrEMBL
      F1QRX4
      Related
      ENSDARP00000076200.5, OTTDARP00000038435, ENSDART00000081761.6, OTTDART00000048980
    2. NM_001327970.1NP_001314899.1  bridging integrator 1b isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      CU655960, CU659670
      Conserved Domains (2) summary
      cl12013
      Location:30283
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:506576
      SH3; Src Homology 3 domain superfamily

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007117.6 Reference GRCz10 Primary Assembly

      Range
      6842320..6895434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009302133.2XP_009300408.1  bridging integrator 1b isoform X5

      Conserved Domains (2) summary
      cl12013
      Location:30240
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:463533
      SH3; Src Homology 3 domain superfamily
    2. XM_009302130.2XP_009300405.1  bridging integrator 1b isoform X2

      Conserved Domains (3) summary
      PHA03151
      Location:335511
      PHA03151; hypothetical protein; Provisional
      cl12013
      Location:30271
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:494564
      SH3; Src Homology 3 domain superfamily
    3. XM_009302131.2XP_009300406.1  bridging integrator 1b isoform X3

      Conserved Domains (2) summary
      cl12013
      Location:30252
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:475545
      SH3; Src Homology 3 domain superfamily
    4. XM_009302129.2XP_009300404.1  bridging integrator 1b isoform X1

      Conserved Domains (3) summary
      PHA03151
      Location:336512
      PHA03151; hypothetical protein; Provisional
      cl12013
      Location:30283
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:495565
      SH3; Src Homology 3 domain superfamily
    5. XM_009302132.2XP_009300407.1  bridging integrator 1b isoform X4

      Conserved Domains (2) summary
      cl12013
      Location:30283
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:473543
      SH3; Src Homology 3 domain superfamily
    6. XM_009302135.2XP_009300410.1  bridging integrator 1b isoform X7

      Conserved Domains (2) summary
      cl12013
      Location:30283
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:370440
      SH3; Src Homology 3 domain superfamily
    7. XM_009302134.2XP_009300409.1  bridging integrator 1b isoform X6

      Conserved Domains (2) summary
      cl12013
      Location:30283
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
      cl17036
      Location:381451
      SH3; Src Homology 3 domain superfamily
    Support Center