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    ABI4 Integrase-type DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818614, updated on 27-Mar-2017
    Gene symbol
    ABI4
    Gene description
    Integrase-type DNA-binding superfamily protein
    Primary source
    Araport:AT2G40220
    Locus tag
    AT2G40220
    Gene type
    protein coding
    RNA name
    Integrase-type DNA-binding superfamily protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ABA INSENSITIVE 4; ABSCISIC ACID-INSENSITIVE PROTEIN 4; ATABI4; GIN6; GLUCOSE INSENSITIVE 6; IMPAIRED SUCROSE INDUCTION 3; ISI3; SALOBRENO 5; SAN5; SIS5; SUCROSE UNCOUPLED 6; SUGAR-INSENSITIVE 5; SUN6; T7M7.16
    Summary
    Encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Acts downstream of GUN1 in retrograde signaling. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.
    See ABI4 in Map Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (16796247..16797585, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene Ribosomal protein L41 family Neighboring gene AGAMOUS-like 48 Neighboring gene ncRNA Neighboring gene ncRNA

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description
    NM_129580.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transcription factor activity, sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    transcription factor activity, sequence-specific DNA binding TAS
    Traceable Author Statement
    more info
    PubMed 
    transcription regulatory region DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    defense response IEA
    Inferred from Electronic Annotation
    more info
     
    ethylene-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    hexokinase-dependent signaling NAS
    Non-traceable Author Statement
    more info
     
    lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mitochondria-nucleus signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondria-nucleus signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of transcription, DNA-templated IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of protein localization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of stomatal movement IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    regulation of transcription, DNA-templated ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of transcription, DNA-templated TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of triglyceride catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to glucose IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to sucrose IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    response to trehalose IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    root meristem growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    seed development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    starch catabolic process NAS
    Non-traceable Author Statement
    more info
    PubMed 
    sugar mediated signaling pathway TAS
    Traceable Author Statement
    more info
    PubMed 
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    nucleus ISM
    Inferred from Sequence Model
    more info
     
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Names
    Integrase-type DNA-binding superfamily protein
    NP_181551.1
    • ABA INSENSITIVE 4 (ABI4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G57600.1); Has 5833 Blast hits to 5755 proteins in 285 species: Archae - 0; Bacteria - 4; Metazoa - 56; Fungi - 8; Plants - 5653; Viruses - 6; Other Eukaryotes - 106 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16796247..16797585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129580.2NP_181551.1  Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181551.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MES8
      Conserved Domains (1) summary
      smart00380
      Location:54112
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
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