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    Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano [ Mus musculus (house mouse) ]

    Gene ID: 14910, updated on 13-Dec-2017
    Official Symbol
    Gt(ROSA)26Sorprovided by MGI
    Official Full Name
    gene trap ROSA 26, Philippe Sorianoprovided by MGI
    Primary source
    MGI:MGI:104735
    See related
    Ensembl:ENSMUSG00000086429
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    R26; ROSA26; AV258896; Gtrgeo26; Gtrosa26; Thumpd3as1
    Summary
    This gene produces a long non-coding RNA (lncRNA) that is under the control of a constitutive promoter. This locus is a widely used site for the integration of transgenes and reporter constructs. [provided by RefSeq, Oct 2015]
    Expression
    Ubiquitous expression in bladder adult (RPKM 11.4), liver E14 (RPKM 10.6) and 25 other tissues See more
    Orthologs
    See Gt(ROSA)26Sor in Genome Data Viewer Map Viewer
    Location:
    6 E3; 6 52.73 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (113067428..113077244, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (113017422..113027238, complement)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene Yip1 interacting factor homolog A pseudogene Neighboring gene ribosomal protein S29 pseudogene Neighboring gene THUMP domain containing 3 Neighboring gene predicted gene, 46982 Neighboring gene SET domain containing 5 Neighboring gene lipoma HMGIC fusion partner-like protein 4

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Homology

    Other Names

    • beta geo

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027008.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      BQ032740, BY207362, U83174
      Related
      ENSMUST00000124246.3
    2. NR_027009.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site near the 5' end, compared to variant 1.
      Source sequence(s)
      AC155722, BQ032740, BY207362
    3. NR_027010.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate 5' and 3' splice pattern, compared to variant 1.
      Source sequence(s)
      AK021028, BY207362, BY727583
      Related
      ENSMUST00000167415.7

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      113067428..113077244 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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