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    Trpm5 transient receptor potential cation channel, subfamily M, member 5 [ Mus musculus (house mouse) ]

    Gene ID: 56843, updated on 19-Dec-2017
    Official Symbol
    Trpm5provided by MGI
    Official Full Name
    transient receptor potential cation channel, subfamily M, member 5provided by MGI
    Primary source
    MGI:MGI:1861718
    See related
    Ensembl:ENSMUSG00000009246 Vega:OTTMUSG00000022683
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mtr1; Ltrpc5; LTrpC-5; 9430099A16Rik
    Expression
    Biased expression in limb E14.5 (RPKM 15.6), small intestine adult (RPKM 3.2) and 6 other tissues See more
    Orthologs
    Location:
    7; 7 F5
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (143071529..143094642, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (150257434..150280547, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene expressed sequence R74862 Neighboring gene CD81 antigen Neighboring gene tumor-suppressing subchromosomal transferable fragment 4 Neighboring gene potassium voltage-gated channel, subfamily Q, member 1 Neighboring gene KCNQ1 overlapping transcript 1 Neighboring gene RIKEN cDNA 4933417O13 gene

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    calcium activated cation channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ion channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    potassium channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    sodium channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    voltage-gated ion channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cation transport IEA
    Inferred from Electronic Annotation
    more info
     
    ion transmembrane transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    sensory perception of taste IEA
    Inferred from Electronic Annotation
    more info
     
    transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    transient receptor potential cation channel subfamily M member 5
    Names
    MLSN1- and TRP-related gene 1 protein
    long transient receptor potential channel 5
    long transient receptor potential-related channel 5

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020277.2NP_064673.2  transient receptor potential cation channel subfamily M member 5

      See identical proteins and their annotated locations for NP_064673.2

      Status: VALIDATED

      Source sequence(s)
      AB039952, AF228681, AK044908
      Consensus CDS
      CCDS52462.1
      UniProtKB/Swiss-Prot
      Q9JJH7
      Related
      ENSMUSP00000009390.3, OTTMUSP00000025953, ENSMUST00000009390.9, OTTMUST00000054375
      Conserved Domains (1) summary
      TIGR00870
      Location:7111022
      trp; transient-receptor-potential calcium channel protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      143071529..143094642 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508645.1XP_006508708.1  transient receptor potential cation channel subfamily M member 5 isoform X1

      See identical proteins and their annotated locations for XP_006508708.1

      UniProtKB/Swiss-Prot
      Q9JJH7
      Conserved Domains (1) summary
      TIGR00870
      Location:7111022
      trp; transient-receptor-potential calcium channel protein
    2. XM_017322384.1XP_017177873.1  transient receptor potential cation channel subfamily M member 5 isoform X4

      Conserved Domains (1) summary
      TIGR00870
      Location:325636
      trp; transient-receptor-potential calcium channel protein
    3. XM_006508646.3XP_006508709.1  transient receptor potential cation channel subfamily M member 5 isoform X2

      See identical proteins and their annotated locations for XP_006508709.1

      UniProtKB/Swiss-Prot
      Q9JJH7
      Related
      ENSMUSP00000114302.1, OTTMUSP00000039048, ENSMUST00000150867.1, OTTMUST00000054376
      Conserved Domains (1) summary
      pfam00520
      Location:758872
      Ion_trans; Ion transport protein
    4. XM_017322383.1XP_017177872.1  transient receptor potential cation channel subfamily M member 5 isoform X3

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