Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 65210, updated on 22-Apr-2017
    Official Symbol
    Cyp2j4provided by RGD
    Official Full Name
    cytochrome P450, family 2, subfamily j, polypeptide 4provided by RGD
    Primary source
    RGD:620007
    See related
    Ensembl:ENSRNOG00000031004
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    CYP2J2
    Summary
    putative cytochrome p450 monooxygenase enzyme; constitutively expressed in lung epithelium; may be involved with rat model of pneumonia [RGD, Feb 2006]
    Annotation information
    Annotation category: partial on reference assembly
    Location:
    5q33
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (119546458..119564843, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (123437429..123455814, complement) , (119130644..119130903, complement)

    Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene receptor tyrosine kinase-like orphan receptor 1 Neighboring gene cytochrome P450, family 2, subfamily j, polypeptide 16 Neighboring gene uncharacterized LOC108351006 Neighboring gene cache domain containing 1 Neighboring gene ribonucleoprotein PTB-binding 2-like

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    • Homologs of the Cyp2j4 gene: The Cyp2j4 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, chicken, zebrafish, fruit fly, mosquito, C.elegans, and frog.

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    arachidonic acid metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    epoxygenase P450 pathway ISO
    Inferred from Sequence Orthology
    more info
     
    female pregnancy IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    linoleic acid metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    response to organic cyclic compound IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    retinoid metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    cytochrome P450, family 2, subfamily j, polypeptide 4

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023025.2NP_075414.2  cytochrome P450, family 2, subfamily j, polypeptide 4

      See identical proteins and their annotated locations for NP_075414.2

      Status: PROVISIONAL

      Source sequence(s)
      BC091149
      UniProtKB/TrEMBL
      Q5BKA2
      Related
      ENSRNOP00000012977.5, ENSRNOT00000012977.5
      Conserved Domains (1) summary
      pfam00067
      Location:44496
      p450; Cytochrome P450

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

      Range
      119546458..119564843 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000073.1 Alternate Rn_Celera

      Range
      109770343..109797690 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center