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    HMGB1 high mobility group box 1 [ Equus caballus (horse) ]

    Gene ID: 100033873, updated on 27-Jan-2018
    Gene symbol
    HMGB1
    Gene description
    high mobility group box 1
    See related
    Ensembl:ENSECAG00000008439
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Also known as
    HMG-1
    Orthologs
    See HMGB1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 17 NC_009160.3 (9853637..9859658, complement)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 17 NC_009160.2 (9782919..9788952, complement)

    Chromosome 17 - NC_009160.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106781865 Neighboring gene 60S ribosomal protein L9 pseudogene Neighboring gene uncharacterized LOC102151089 Neighboring gene ubiquitin specific peptidase like 1 Neighboring gene transfer RNA asparagine (anticodon GUU)

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • Autophagy - animal, organism-specific biosystem (from KEGG)
      Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - animal, conserved biosystem (from KEGG)
      Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Base excision repair, organism-specific biosystem (from KEGG)
      Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
    • Base excision repair, conserved biosystem (from KEGG)
      Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...

    Markers

    Homology

    Preferred Names
    high mobility group protein B1
    Names
    high mobility group protein 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081835.2NP_001075304.1  high mobility group protein B1

      See identical proteins and their annotated locations for NP_001075304.1

      Status: VALIDATED

      Source sequence(s)
      AAWR02035342, AB275457, CD470030, CD470166, CD535266
      UniProtKB/Swiss-Prot
      Q08IE6
      UniProtKB/TrEMBL
      K9K2L5
      Related
      ENSECAP00000006518.1, ENSECAT00000008670.1
      Conserved Domains (2) summary
      pfam00505
      Location:95162
      HMG_box; HMG (high mobility group) box
      pfam09011
      Location:778
      HMG_box_2; HMG-box domain

    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009160.3 Reference EquCab3.0 Primary Assembly

      Range
      9853637..9859658 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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