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    Rho rhodopsin [ Mus musculus (house mouse) ]

    Gene ID: 212541, updated on 8-Aug-2017
    Official Symbol
    Rhoprovided by MGI
    Official Full Name
    rhodopsinprovided by MGI
    Primary source
    MGI:MGI:97914
    See related
    Ensembl:ENSMUSG00000030324 Vega:OTTMUSG00000056681
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ops; RP4; Opn2; Noerg1
    Orthologs
    Location:
    6 E3; 6 53.72 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (115926754..115940036)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (115881945..115888848)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene methyl-CpG binding domain protein 4 Neighboring gene intraflagellar transport 122 Neighboring gene H1 histone family, member O, oocyte-specific Neighboring gene plexin D1

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Homology

    Clone Names

    • MGC21585, MGC25387

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    G-protein coupled photoreceptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    G-protein coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    photoreceptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    retinal binding ISO
    Inferred from Sequence Orthology
    more info
     
    signal transducer activity IEA
    Inferred from Electronic Annotation
    more info
     
    spectrin binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    G-protein coupled receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    cellular response to light stimulus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    detection of light stimulus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    photoreceptor cell maintenance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    phototransduction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein phosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein-chromophore linkage IEA
    Inferred from Electronic Annotation
    more info
     
    red, far-red light phototransduction ISO
    Inferred from Sequence Orthology
    more info
     
    response to light stimulus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    retina development in camera-type eye IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    rhodopsin mediated signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    sensory perception of light stimulus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    visual perception IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    cell-cell junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    photoreceptor inner segment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor inner segment ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    photoreceptor inner segment membrane ISO
    Inferred from Sequence Orthology
    more info
     
    photoreceptor outer segment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor outer segment ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    photoreceptor outer segment membrane ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    rough endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    rhodopsin
    Names
    L opsin
    LWS opsin
    Long Wavelength Sensitive opsin
    Red Opsin
    Rod Opsin
    opsin 2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145383.1NP_663358.1  rhodopsin

      See identical proteins and their annotated locations for NP_663358.1

      Status: PROVISIONAL

      Source sequence(s)
      BC013125
      Consensus CDS
      CCDS20446.1
      UniProtKB/Swiss-Prot
      P15409
      Related
      ENSMUSP00000032471.6, OTTMUSP00000073385, ENSMUST00000032471.8, OTTMUST00000139898
      Conserved Domains (3) summary
      pfam00001
      Location:55306
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      pfam10413
      Location:237
      Rhodopsin_N; Amino terminal of the G-protein receptor rhodopsin
      cl21561
      Location:45323
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      115926754..115940036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505861.2XP_006505924.1  rhodopsin isoform X2

      Conserved Domains (3) summary
      pfam00001
      Location:45296
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      pfam10413
      Location:727
      Rhodopsin_N; Amino terminal of the G-protein receptor rhodopsin
      cl21561
      Location:35313
      7tm_4; Olfactory receptor
    2. XM_017321493.1XP_017176982.1  rhodopsin isoform X3

    3. XM_006505860.2XP_006505923.1  rhodopsin isoform X1

      Conserved Domains (3) summary
      pfam00001
      Location:51302
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      pfam10413
      Location:1033
      Rhodopsin_N; Amino terminal of the G-protein receptor rhodopsin
      cl21561
      Location:41319
      7tm_4; Olfactory receptor
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