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    Bnc2 basonuclin 2 [ Mus musculus (house mouse) ]

    Gene ID: 242509, updated on 9-Jul-2017
    Official Symbol
    Bnc2provided by MGI
    Official Full Name
    basonuclin 2provided by MGI
    Primary source
    MGI:MGI:2443805
    See related
    Ensembl:ENSMUSG00000028487 Vega:OTTMUSG00000006757
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    5031434M05Rik; 8430420F16Rik
    Orthologs
    Location:
    4; 4 C4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (84266804..84676354, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (83918446..84320990, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene predicted gene 12414 Neighboring gene predicted gene, 33597 Neighboring gene serine incorporator 3 pseudogene Neighboring gene predicted gene 12415

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • MGC124423, MGC124424

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    endochondral bone growth IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mesenchyme development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    palate development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    NOT regulation of apoptotic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    tongue development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    zinc finger protein basonuclin-2
    Names
    bnc2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172870.4NP_766458.3  zinc finger protein basonuclin-2

      Status: VALIDATED

      Source sequence(s)
      AK030323, AL772261, BC110484, BF468792
      Consensus CDS
      CCDS18301.2
      UniProtKB/Swiss-Prot
      Q8BMQ3
      UniProtKB/TrEMBL
      Q2TBA4
      Related
      ENSMUSP00000135375.1, OTTMUSP00000007155, ENSMUST00000176691.7, OTTMUST00000015530
      Conserved Domains (1) summary
      sd00017
      Location:970991
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      84266804..84676354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320203.1XP_017175692.1  zinc finger protein basonuclin-2 isoform X1

    2. XM_017320204.1XP_017175693.1  zinc finger protein basonuclin-2 isoform X2

    3. XM_017320205.1XP_017175694.1  zinc finger protein basonuclin-2 isoform X3

      Related
      ENSMUSP00000099884.2, OTTMUSP00000007156, ENSMUST00000102820.8, OTTMUST00000015531
    4. XM_017320209.1XP_017175698.1  zinc finger protein basonuclin-2 isoform X8

    5. XM_017320207.1XP_017175696.1  zinc finger protein basonuclin-2 isoform X5

    6. XM_017320210.1XP_017175699.1  zinc finger protein basonuclin-2 isoform X9

    7. XM_017320206.1XP_017175695.1  zinc finger protein basonuclin-2 isoform X4

      Conserved Domains (1) summary
      sd00017
      Location:10841105
      ZF_C2H2; C2H2 Zn finger [structural motif]
    8. XM_017320211.1XP_017175700.1  zinc finger protein basonuclin-2 isoform X10

    9. XM_017320208.1XP_017175697.1  zinc finger protein basonuclin-2 isoform X6

    10. XM_017320212.1XP_017175701.1  zinc finger protein basonuclin-2 isoform X11

      Conserved Domains (1) summary
      sd00017
      Location:9891010
      ZF_C2H2; C2H2 Zn finger [structural motif]
    11. XM_017320213.1XP_017175702.1  zinc finger protein basonuclin-2 isoform X12

    12. XM_017320214.1XP_017175703.1  zinc finger protein basonuclin-2 isoform X13

    13. XM_006537933.3XP_006537996.1  zinc finger protein basonuclin-2 isoform X7

      Conserved Domains (1) summary
      sd00017
      Location:10561077
      ZF_C2H2; C2H2 Zn finger [structural motif]
    14. XM_006537940.3XP_006538003.1  zinc finger protein basonuclin-2 isoform X14

      Conserved Domains (1) summary
      sd00017
      Location:490511
      ZF_C2H2; C2H2 Zn finger [structural motif]
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