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    Rpsa ribosomal protein SA [ Mus musculus (house mouse) ]

    Gene ID: 16785, updated on 9-Jul-2017
    Official Symbol
    Rpsaprovided by MGI
    Official Full Name
    ribosomal protein SAprovided by MGI
    Primary source
    MGI:MGI:105381
    See related
    Ensembl:ENSMUSG00000032518 Vega:OTTMUSG00000062571
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MLR; P40; 67lr; Lamr; 67kDa; Lamr1; P40-3; P40-8; Lamrl1; AL022858
    Orthologs
    Location:
    9 F4; 9 71.41 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (120127766..120132369)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (120036884..120041487)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene chemokine (C-C motif) receptor 8 Neighboring gene solute carrier family 25, member 38 Neighboring gene small nucleolar RNA, H/ACA box 62 Neighboring gene predicted gene 5922 Neighboring gene myelin-associated oligodendrocytic basic protein

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • MGC117921, MGC118614

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    laminin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    laminin receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    ribosome binding ISO
    Inferred from Sequence Orthology
    more info
     
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    rRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    ribosomal small subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    single organismal cell-cell adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    translation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    90S preribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    basement membrane ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular matrix ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
     
    membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    40S ribosomal protein SA
    Names
    37 kDa laminin receptor
    37 kDa oncofetal antigen
    37/67 kDa laminin receptor
    37LRP
    67 kDa laminin receptor
    67LR
    LBP/p40
    LRP/LR
    OFA/iLRP
    P40-3, functional
    P40-8, functional
    lamR
    laminin receptor 1 (67kD, ribosomal protein SA)
    laminin-binding protein precursor p40

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011029.4NP_035159.3  40S ribosomal protein SA

      See identical proteins and their annotated locations for NP_035159.3

      Status: VALIDATED

      Source sequence(s)
      AK011043, AK082935, AV586849, BC081461
      Consensus CDS
      CCDS23623.1
      UniProtKB/Swiss-Prot
      P14206
      Related
      ENSMUSP00000035105.5, OTTMUSP00000079005, ENSMUST00000035105.6, OTTMUST00000152415
      Conserved Domains (3) summary
      PTZ00254
      Location:1250
      PTZ00254; 40S ribosomal protein SA; Provisional
      TIGR01012
      Location:10206
      uS2_euk_arch; ribosomal protein uS2, eukaryotic/archaeal form
      pfam16122
      Location:202295
      40S_SA_C; 40S ribosomal protein SA C-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      120127766..120132369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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