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    Obp1f odorant binding protein I f [ Rattus norvegicus (Norway rat) ]

    Gene ID: 192267, updated on 11-Mar-2018
    Official Symbol
    Obp1fprovided by RGD
    Official Full Name
    odorant binding protein I fprovided by RGD
    Primary source
    RGD:621639
    See related
    Ensembl:ENSRNOG00000049515
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Obp-1f
    Summary
    selectively binds odorants and may be involved in carrying odorants within the nasal epithelium to putative olfactory receptors [RGD, Feb 2006]
    Expression
    Biased expression in Brain (RPKM 4.2), Liver (RPKM 2.7) and 7 other tissues See more
    See Obp1f in Genome Data Viewer
    Location:
    Xq31
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (83847944..83864150, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (83742999..83746062) , (45505140..45506321, complement)

    Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108348177 Neighboring gene spermidine/spermine N1-acetyl transferase-like 1 Neighboring gene elongation factor 1-alpha 1-like Neighboring gene similar to RIKEN cDNA 2010106E10

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    odorant binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    small molecule binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    sensory perception of smell IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    odorant-binding protein
    Names
    OBP
    odorant-binding protein 1F

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138903.1NP_620258.1  odorant-binding protein precursor

      See identical proteins and their annotated locations for NP_620258.1

      Status: PROVISIONAL

      Source sequence(s)
      J03093
      UniProtKB/Swiss-Prot
      P08937
      Related
      ENSRNOP00000064887.1, ENSRNOT00000073734.1
      Conserved Domains (1) summary
      pfam00061
      Location:29168
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

      Range
      83847944..83864150 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000089.1 Alternate Rn_Celera

      Range
      42669718..42676625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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