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    Col17a1 collagen, type XVII, alpha 1 [ Mus musculus (house mouse) ]

    Gene ID: 12821, updated on 27-Jan-2018
    Official Symbol
    Col17a1provided by MGI
    Official Full Name
    collagen, type XVII, alpha 1provided by MGI
    Primary source
    MGI:MGI:88450
    See related
    Ensembl:ENSMUSG00000025064 Vega:OTTMUSG00000021388
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bpag; BP180; Bpag2
    Expression
    Biased expression in limb E14.5 (RPKM 10.4), mammary gland adult (RPKM 7.6) and 7 other tissues See more
    Orthologs
    Location:
    19 D1; 19 40.07 cM
    Exon count:
    54
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (47646341..47692042, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (47720831..47766532, complement)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 19557 Neighboring gene STN1, CST complex subunit Neighboring gene STE20-like kinase Neighboring gene predicted gene 16068 Neighboring gene cilia and flagella associated protein 43 Neighboring gene SWI5 dependent recombination repair 1 Neighboring gene microRNA 8090

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    basement membrane IEA
    Inferred from Electronic Annotation
    more info
     
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    collagen trimer IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    hemidesmosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    proteinaceous extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    collagen alpha-1(XVII) chain
    Names
    180 kDa bullous pemphigoid antigen 2
    bullous pemphigoid antigen 2
    procollagen, type XVII, alpha 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001290825.1NP_001277754.1  collagen alpha-1(XVII) chain isoform 1

      See identical proteins and their annotated locations for NP_001277754.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC125075, AC131719
      Consensus CDS
      CCDS70959.1
      UniProtKB/Swiss-Prot
      Q07563
      Related
      ENSMUSP00000026045.7, OTTMUSP00000023734, ENSMUST00000026045.13, OTTMUST00000050702
      Conserved Domains (1) summary
      pfam01391
      Location:705763
      Collagen; Collagen triple helix repeat (20 copies)
    2. NM_007732.2NP_031758.2  collagen alpha-1(XVII) chain isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC125075, AC131719
      Consensus CDS
      CCDS38018.1
      UniProtKB/Swiss-Prot
      Q07563
      Related
      ENSMUSP00000084141.5, OTTMUSP00000023739, ENSMUST00000086923.5, OTTMUST00000050711
      Conserved Domains (1) summary
      pfam01391
      Location:705763
      Collagen; Collagen triple helix repeat (20 copies)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      47646341..47692042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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