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    Ly6a lymphocyte antigen 6 complex, locus A [ Mus musculus (house mouse) ]

    Gene ID: 110454, updated on 21-May-2017
    Official Symbol
    Ly6aprovided by MGI
    Official Full Name
    lymphocyte antigen 6 complex, locus Aprovided by MGI
    Primary source
    MGI:MGI:107527
    See related
    Ensembl:ENSMUSG00000075602 Vega:OTTMUSG00000045110
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TAP; Sca1; Sca-1; Ly-6A.2; Ly-6A/E; Ly-6E.1
    Location:
    15 D3; 15 34.29 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (74994877..74998031, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (74825307..74828318, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene predicted gene 28068 Neighboring gene predicted gene 8000 Neighboring gene predicted gene, 41348 Neighboring gene lymphocyte antigen 6 complex, locus C1 Neighboring gene predicted gene 5960

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    anchored component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    intracellular IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    lymphocyte antigen 6A-2/6E-1
    Names
    T-cell-activating protein
    stem cell antigen 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271416.1NP_001258345.1  lymphocyte antigen 6A-2/6E-1 precursor

      See identical proteins and their annotated locations for NP_001258345.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, 3, 4, 5, and 6 encode the same protein.
      Source sequence(s)
      AC124637
      Consensus CDS
      CCDS27540.1
      UniProtKB/Swiss-Prot
      P05533
      Related
      ENSMUSP00000140638.1, OTTMUSP00000066168, ENSMUST00000189068.6, OTTMUST00000118546
      Conserved Domains (1) summary
      smart00134
      Location:27111
      LU; Ly-6 antigen / uPA receptor -like domain
    2. NM_001271417.1NP_001258346.1  lymphocyte antigen 6A-2/6E-1 precursor

      See identical proteins and their annotated locations for NP_001258346.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 5' UTR, compared to variant 1. Variants 1, 2, 3, 4, 5, and 6 encode the same protein.
      Source sequence(s)
      AC124637, BG085582
      Consensus CDS
      CCDS27540.1
      UniProtKB/Swiss-Prot
      P05533
      Related
      ENSMUSP00000140998.1, OTTMUSP00000066171, ENSMUST00000186526.6, OTTMUST00000118549
      Conserved Domains (1) summary
      smart00134
      Location:27111
      LU; Ly-6 antigen / uPA receptor -like domain
    3. NM_001271418.1NP_001258347.1  lymphocyte antigen 6A-2/6E-1 precursor

      See identical proteins and their annotated locations for NP_001258347.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses two alternate splice sites in the 5' UTR, compared to variant 1. Variants 1, 2, 3, 4, 5, and 6 encode the same protein.
      Source sequence(s)
      AC124637
      Consensus CDS
      CCDS27540.1
      UniProtKB/Swiss-Prot
      P05533
      Conserved Domains (1) summary
      smart00134
      Location:27111
      LU; Ly-6 antigen / uPA receptor -like domain
    4. NM_001271419.1NP_001258348.1  lymphocyte antigen 6A-2/6E-1 precursor

      See identical proteins and their annotated locations for NP_001258348.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) uses two alternate splice sites in the 5' UTR, compared to variant 1. Variants 1, 2, 3, 4, 5, and 6 encode the same protein.
      Source sequence(s)
      AC124637, J03636
      Consensus CDS
      CCDS27540.1
      UniProtKB/Swiss-Prot
      P05533
      Related
      ENSMUSP00000140287.1, OTTMUSP00000066169, ENSMUST00000187994.6, OTTMUST00000118547
      Conserved Domains (1) summary
      smart00134
      Location:27111
      LU; Ly-6 antigen / uPA receptor -like domain
    5. NM_001271446.1NP_001258375.1  lymphocyte antigen 6A-2/6E-1 precursor

      See identical proteins and their annotated locations for NP_001258375.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) uses two alternate splice sites in the 5' UTR, compared to variant 1. Variants 1, 2, 3, 4, 5, and 6 encode the same protein.
      Source sequence(s)
      AC124637
      Consensus CDS
      CCDS27540.1
      UniProtKB/Swiss-Prot
      P05533
      Conserved Domains (1) summary
      smart00134
      Location:27111
      LU; Ly-6 antigen / uPA receptor -like domain
    6. NM_010738.3NP_034868.1  lymphocyte antigen 6A-2/6E-1 precursor

      See identical proteins and their annotated locations for NP_034868.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site in the 5' UTR, compared to variant 1. Variants 1, 2, 3, 4, 5, and 6 encode the same protein.
      Source sequence(s)
      AC124637, BY228083
      Consensus CDS
      CCDS27540.1
      UniProtKB/Swiss-Prot
      P05533
      Related
      ENSMUSP00000140099.1, OTTMUSP00000066170, ENSMUST00000187171.1, OTTMUST00000118548
      Conserved Domains (1) summary
      smart00134
      Location:27111
      LU; Ly-6 antigen / uPA receptor -like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      74994877..74998031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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