Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    Aspscr1 alveolar soft part sarcoma chromosome region, candidate 1 (human) [ Mus musculus (house mouse) ]

    Gene ID: 68938, updated on 22-Apr-2017
    Official Symbol
    Aspscr1provided by MGI
    Official Full Name
    alveolar soft part sarcoma chromosome region, candidate 1 (human)provided by MGI
    Primary source
    MGI:MGI:1916188
    See related
    Ensembl:ENSMUSG00000025142 Vega:OTTMUSG00000004078
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TUG; ASPC; ASPL; ASPS; RCC17; ASPCR1; 1190006K01Rik
    Orthologs
    Location:
    11; 11 E2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (120672439..120709447)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (120534287..120570761)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene myeloid-associated differentiation marker-like 2 Neighboring gene notum pectinacetylesterase homolog (Drosophila) Neighboring gene centromere protein X Neighboring gene leucine rich repeat containing 45

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    glucose homeostasis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    intracellular protein transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of glucose import IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasmic side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extrinsic component of membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    vesicle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    tether containing UBX domain for GLUT4
    Names
    alveolar soft part sarcoma chromosomal region candidate gene 1 protein homolog
    tether, containing a UBX domain, for GLUT4

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001164224.1NP_001157696.1  tether containing UBX domain for GLUT4 isoform 3

      See identical proteins and their annotated locations for NP_001157696.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents use of an alternate promoter and 5' UTR, uses a downstream start codon, and lacks an alternate in-frame exon in the central coding region, compared to variant 1. The resulting isoform (3) has a shorter N-terminus and lacks an internal segment, compared to isoform 1.
      Source sequence(s)
      AK146061, AY349132
      Consensus CDS
      CCDS49008.1
      UniProtKB/Swiss-Prot
      Q8VBT9
      Related
      ENSMUSP00000101766.2, OTTMUSP00000051980, ENSMUST00000106160.8, OTTMUST00000093614
    2. NM_026877.2NP_081153.1  tether containing UBX domain for GLUT4 isoform 1

      See identical proteins and their annotated locations for NP_081153.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1), also known as the long isoform.
      Source sequence(s)
      AY349133, CJ088693
      Consensus CDS
      CCDS25751.1
      UniProtKB/Swiss-Prot
      Q8VBT9
      Related
      ENSMUSP00000026135.8, OTTMUSP00000004448, ENSMUST00000026135.14, OTTMUST00000009139
      Conserved Domains (2) summary
      pfam11470
      Location:1578
      TUG-UBL1; TUG ubiquitin-like domain
      cl00155
      Location:385456
      UBQ; Ubiquitin-like proteins
    3. NM_198223.2NP_937866.1  tether containing UBX domain for GLUT4 isoform 2

      See identical proteins and their annotated locations for NP_937866.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents use of an alternate promoter and 5' UTR and uses a downstream start codon, compared to variant 1. The resulting isoform (2), also known as the short isoform, has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AK146061, AY349132
      Consensus CDS
      CCDS25752.1
      UniProtKB/Swiss-Prot
      Q8VBT9
      Related
      ENSMUSP00000101765.3, ENSMUST00000106159.9
      Conserved Domains (1) summary
      cl00155
      Location:308379
      UBQ; Ubiquitin-like proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      120672439..120709447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534085.1XP_006534148.1  tether containing UBX domain for GLUT4 isoform X2

      Conserved Domains (1) summary
      pfam11470
      Location:1578
      TUG-UBL1; TUG ubiquitin-like domain
    2. XM_006534084.2XP_006534147.1  tether containing UBX domain for GLUT4 isoform X1

      Conserved Domains (2) summary
      pfam11470
      Location:463
      TUG-UBL1; TUG ubiquitin-like domain
      cl00155
      Location:370441
      UBQ; Ubiquitin-like proteins
    3. XM_006534086.3XP_006534149.1  tether containing UBX domain for GLUT4 isoform X3

      See identical proteins and their annotated locations for XP_006534149.1

      UniProtKB/Swiss-Prot
      Q8VBT9
      Conserved Domains (1) summary
      cl00155
      Location:308379
      UBQ; Ubiquitin-like proteins
    4. XM_006534087.3XP_006534150.1  tether containing UBX domain for GLUT4 isoform X3

      See identical proteins and their annotated locations for XP_006534150.1

      UniProtKB/Swiss-Prot
      Q8VBT9
      Conserved Domains (1) summary
      cl00155
      Location:308379
      UBQ; Ubiquitin-like proteins
    Support Center