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    ARAD1 Exostosin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818076, updated on 4-Jun-2017
    Gene symbol
    ARAD1
    Gene description
    Exostosin family protein
    Primary source
    Araport:AT2G35100
    Locus tag
    AT2G35100
    Gene type
    protein coding
    RNA name
    Exostosin family protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABINAN DEFICIENT 1; ARABINOSYLTRANSFERASE; T4C15.23; T4C15_23
    Summary
    Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.
    See ARAD1 in Map Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (14793567..14795701, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein Neighboring gene transmembrane protein, putative (DUF1640) Neighboring gene transcription activator Neighboring gene Single hybrid motif superfamily protein

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description
    NM_179910.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    catalytic activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transferase activity, transferring glycosyl groups ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    cell wall organization IEA
    Inferred from Electronic Annotation
    more info
     
    pectin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Golgi apparatus ISM
    Inferred from Sequence Model
    more info
     
    Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
     
    endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Names
    Exostosin family protein
    NP_850241.1
    • ARABINAN DEFICIENT 1 (ARAD1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: pectin biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G44930.2); Has 1290 Blast hits to 1285 proteins in 106 species: Archae - 0; Bacteria - 8; Metazoa - 193; Fungi - 4; Plants - 1016; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14793567..14795701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179910.3NP_850241.1  Exostosin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850241.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6DBG8
      UniProtKB/TrEMBL
      A0A178VSN1
      Conserved Domains (1) summary
      pfam03016
      Location:56368
      Exostosin; Exostosin family
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