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    Hmgn1 high mobility group nucleosomal binding domain 1 [ Mus musculus (house mouse) ]

    Gene ID: 15312, updated on 25-Sep-2017
    Official Symbol
    Hmgn1provided by MGI
    Official Full Name
    high mobility group nucleosomal binding domain 1provided by MGI
    Primary source
    MGI:MGI:96120
    See related
    Ensembl:ENSMUSG00000040681 Vega:OTTMUSG00000019978
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Hmg14; HMG-14
    Expression
    Broad expression in CNS E11.5 (RPKM 270.4), limb E14.5 (RPKM 161.5) and 21 other tissues See more
    Orthologs
    Location:
    16 C4; 16 56.83 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (96121588..96127725, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (96343195..96349332, complement)

    Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene proteasome (prosome, macropain) assembly chaperone 1 Neighboring gene bromodomain and WD repeat domain containing 1 Neighboring gene tryptophan rich basic protein Neighboring gene Leber congenital amaurosis 5-like Neighboring gene SH3-binding domain glutamic acid-rich protein

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • MGC103397

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    chromatin IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    non-histone chromosomal protein HMG-14
    Names
    high mobility group nucleosome-binding domain-containing protein 1
    high mobility group protein 14

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008251.3NP_032277.3  non-histone chromosomal protein HMG-14

      See identical proteins and their annotated locations for NP_032277.3

      Status: VALIDATED

      Source sequence(s)
      AK010763, BU923172
      Consensus CDS
      CCDS28353.1
      UniProtKB/Swiss-Prot
      P18608
      UniProtKB/TrEMBL
      Q8CEW1
      Related
      ENSMUSP00000061012.7, OTTMUSP00000021569, ENSMUST00000050884.13, OTTMUST00000047610
      Conserved Domains (1) summary
      pfam01101
      Location:290
      HMG14_17; HMG14 and HMG17

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

      Range
      96121588..96127725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 129S6/SvEvTac

    Genomic

    1. NT_187015.1 Reference GRCm38.p4 129S6/SvEvTac

      Range
      275545..281682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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