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    truB tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947687, updated on 19-Nov-2016
    Gene symbol
    truB
    Gene description
    tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase
    Primary source
    EcoGene:EG11177
    Locus tag
    b3166
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3155; JW3135; yhbA
    Summary
    [More information is available at EcoGene: EG11177]. TruB catalyzes pseudouridylation at position 55 in tRNA . [More information is available at EcoCyc: EG11177].
    Sequence:
    NC_000913.3 (3311833..3312777, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 30S ribosomal subunit protein S15 Neighboring gene 30s ribosome binding factor Neighboring gene translation initiation factor IF-2 Neighboring gene transcription termination/antitermination L factor

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    pseudouridine synthase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    mRNA pseudouridine synthesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    pseudouridine synthesis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    tRNA modification IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Names
    tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase
    NP_417635.1
    • tRNA pseudouridine 5S synthase

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3311833..3312777 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417635.1 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417635.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P60340
      Conserved Domains (3) summary
      cd02573
      Location:13222
      PseudoU_synth_EcTruB; Pseudouridine synthase, Escherichia coli TruB like
      PRK05033
      Location:3314
      truB; tRNA pseudouridine synthase B; Provisional
      pfam09157
      Location:252309
      TruB-C_2; Pseudouridine synthase II TruB, C-terminal
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