Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    APG10 Aldolase-type TIM barrel family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818195, updated on 28-Mar-2017
    Gene symbol
    APG10
    Gene description
    Aldolase-type TIM barrel family protein
    Primary source
    Araport:AT2G36230
    Locus tag
    AT2G36230
    Gene type
    protein coding
    RNA name
    Aldolase-type TIM barrel family protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ALBINO AND PALE GREEN 10; BBM II ISOMERASE; F2H17.16; F2H17_16; HISN3; PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMERASE
    Summary
    Encodes a BBMII isomerase involved in histidine biosynthesis.
    See APG10 in Map Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (15193694..15195558, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene Tubulin/FtsZ family protein

    Homology

    NM_129181.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    histidine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    histidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    histidine biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    tryptophan biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    chloroplast IDA
    Inferred from Direct Assay
    more info
    PubMed 
    chloroplast TAS
    Traceable Author Statement
    more info
    PubMed 
    Names
    Aldolase-type TIM barrel family protein
    NP_181165.1
    • ALBINO AND PALE GREEN 10 (APG10); FUNCTIONS IN: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis (InterPro:IPR006062), Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic (InterPro:IPR011858); Has 5178 Blast hits to 5176 proteins in 1344 species: Archae - 226; Bacteria - 3159; Metazoa - 0; Fungi - 140; Plants - 59; Viruses - 0; Other Eukaryotes - 1594 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15193694..15195558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129181.4NP_181165.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181165.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82782
      Conserved Domains (1) summary
      PLN02446
      Location:44302
      PLN02446; (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
    Support Center