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    Pla2g7 phospholipase A2 group VII [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301265, updated on 3-Apr-2018
    Official Symbol
    Pla2g7provided by RGD
    Official Full Name
    phospholipase A2 group VIIprovided by RGD
    Primary source
    RGD:1310734
    See related
    Ensembl:ENSRNOG00000025691
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Brain (RPKM 34.6), Spleen (RPKM 29.4) and 9 other tissues See more
    Orthologs
    See Pla2g7 in Genome Data Viewer
    Location:
    9q13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (19935754..19978013, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 9 NC_005108.3 (18813216..18855030, complement)

    Chromosome 9 - NC_005108.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108351896 Neighboring gene tudor domain containing 6 Neighboring gene ankyrin repeat domain 66 Neighboring gene meprin A subunit alpha Neighboring gene adhesion G protein-coupled receptor F5

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Homology

    Clone Names

    • MGC95107

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    1-alkyl-2-acetylglycerophosphocholine esterase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    1-alkyl-2-acetylglycerophosphocholine esterase activity ISO
    Inferred from Sequence Orthology
    more info
     
    calcium-independent phospholipase A2 activity IEA
    Inferred from Electronic Annotation
    more info
     
    calcium-independent phospholipase A2 activity ISO
    Inferred from Sequence Orthology
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipid binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid oxidation IEA
    Inferred from Electronic Annotation
    more info
     
    lipid oxidation ISO
    Inferred from Sequence Orthology
    more info
     
    low-density lipoprotein particle remodeling IEA
    Inferred from Electronic Annotation
    more info
     
    low-density lipoprotein particle remodeling ISO
    Inferred from Sequence Orthology
    more info
     
    plasma lipoprotein particle oxidation IEA
    Inferred from Electronic Annotation
    more info
     
    plasma lipoprotein particle oxidation ISO
    Inferred from Sequence Orthology
    more info
     
    platelet activating factor metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    platelet activating factor metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of monocyte chemotaxis IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of monocyte chemotaxis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
     
    low-density lipoprotein particle ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    platelet-activating factor acetylhydrolase
    Names
    phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
    NP_001009353.1
    XP_006244668.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009353.1NP_001009353.1  platelet-activating factor acetylhydrolase precursor

      See identical proteins and their annotated locations for NP_001009353.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088457
      UniProtKB/TrEMBL
      Q5M7T7
      Related
      ENSRNOP00000031958.3, ENSRNOT00000038222.4
      Conserved Domains (1) summary
      pfam03403
      Location:47415
      PAF-AH_p_II; Platelet-activating factor acetylhydrolase, isoform II

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005108.4 Reference Rnor_6.0 Primary Assembly

      Range
      19935754..19978013 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006244606.3XP_006244668.1  platelet-activating factor acetylhydrolase isoform X1

      Conserved Domains (1) summary
      pfam03403
      Location:80448
      PAF-AH_p_II; Platelet-activating factor acetylhydrolase, isoform II

    Alternate Rn_Celera

    Genomic

    1. AC_000077.1 Alternate Rn_Celera

      Range
      15085734..15127419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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