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    Prop1 paired like homeodomain factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 19127, updated on 12-Mar-2017
    Official Symbol
    Prop1provided by MGI
    Official Full Name
    paired like homeodomain factor 1provided by MGI
    Primary source
    MGI:MGI:109330
    See related
    Ensembl:ENSMUSG00000044542 Vega:OTTMUSG00000007884
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    df; Prop-1
    Orthologs
    Location:
    11 B1.3; 11 30.95 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (50950806..50953632, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (50764308..50767134, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 354B Neighboring gene RIKEN cDNA 4933414I15 gene Neighboring gene olfactory receptor 1379, pseudogene 1 Neighboring gene olfactory receptor 1378

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    adenohypophysis development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    animal organ morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    blood vessel development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    canonical Wnt signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    cell migration IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    dorsal/ventral pattern formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    gland development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hypophysis morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hypothalamus cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of apoptotic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of transcription from RNA polymerase II promoter IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    somatotropin secreting cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    homeobox protein prophet of Pit-1
    Names
    Ames dwarf
    pituitary specific homeodomain factor
    prophet of Pit-1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008936.1NP_032962.1  homeobox protein prophet of Pit-1

      See identical proteins and their annotated locations for NP_032962.1

      Status: PROVISIONAL

      Source sequence(s)
      U77946
      Consensus CDS
      CCDS24643.1
      UniProtKB/Swiss-Prot
      P97458
      Related
      ENSMUSP00000057231, OTTMUSP00000008241, ENSMUST00000051159, OTTMUST00000017931
      Conserved Domains (1) summary
      pfam00046
      Location:69122
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      50950806..50953632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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