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    Banf1 barrier to autointegration factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 23825, updated on 12-Mar-2017
    Official Symbol
    Banf1provided by MGI
    Official Full Name
    barrier to autointegration factor 1provided by MGI
    Primary source
    MGI:MGI:1346330
    See related
    Ensembl:ENSMUSG00000024844
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Baf; Bcrp1; L2bp1/Baf
    Orthologs
    Location:
    19; 19 A
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (5364633..5366876, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (5364640..5366645, complement)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene cation channel, sperm associated 1 Neighboring gene cystatin E/M Neighboring gene eukaryotic translation initiation factor 1A domain containing Neighboring gene squamous cell carcinoma antigen recognized by T cells 1 Neighboring gene RIKEN cDNA D330050I16 gene Neighboring gene testis specific 10 interacting protein

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA binding TAS
    Traceable Author Statement
    more info
    PubMed 
    LEM domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein C-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein N-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    DNA integration IDA
    Inferred from Direct Assay
    more info
    PubMed 
    establishment of integrated proviral latency TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    condensed chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    barrier-to-autointegration factor
    Names
    LAP2-binding protein 1
    breakpoint cluster region protein 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038231.2NP_001033320.1  barrier-to-autointegration factor

      See identical proteins and their annotated locations for NP_001033320.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 3. Variants 1-3 encode the same protein.
      Source sequence(s)
      AC122861, AK010257
      Consensus CDS
      CCDS29458.1
      UniProtKB/Swiss-Prot
      O54962
      Related
      ENSMUSP00000126202, ENSMUST00000170010
      Conserved Domains (1) summary
      pfam02961
      Location:186
      BAF; Barrier to autointegration factor
    2. NM_001286608.1NP_001273537.1  barrier-to-autointegration factor

      See identical proteins and their annotated locations for NP_001273537.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript and encodes the functional protein. Variants 1-3 encode the same protein.
      Source sequence(s)
      AC122861, AK011079, BE863097, BY111854
      Consensus CDS
      CCDS29458.1
      UniProtKB/Swiss-Prot
      O54962
      Conserved Domains (1) summary
      pfam02961
      Location:186
      BAF; Barrier to autointegration factor
    3. NM_011793.3NP_035923.1  barrier-to-autointegration factor

      See identical proteins and their annotated locations for NP_035923.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR, compared to variant 3. Variants 1-3 encode the same protein.
      Source sequence(s)
      AC122861, AK011079, BE863097
      Consensus CDS
      CCDS29458.1
      UniProtKB/Swiss-Prot
      O54962
      Related
      ENSMUSP00000025762, ENSMUST00000025762
      Conserved Domains (1) summary
      pfam02961
      Location:186
      BAF; Barrier to autointegration factor

    RNA

    1. NR_104482.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice site in the 5'-terminal exon and lacks an internal exon, compared to variant 3. This variant is represented as non-coding because it lacks a significant portion of the coding region and does not encode a supported protein.
      Source sequence(s)
      AC122861, AK011079, BE863097

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      5364633..5366876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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