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    SSD1 mRNA-binding translational repressor SSD1 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851887, updated on 22-May-2018
    Gene symbol
    SSD1
    Gene description
    mRNA-binding translational repressor SSD1
    Primary source
    SGD:S000002701
    Locus tag
    YDR293C
    Gene type
    protein coding
    RNA name
    mRNA-binding translational repressor SSD1
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    CLA1; MCS1; RLT1; SRK1
    See SSD1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (1045640..1049392, complement)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene ATP-dependent 3'-5' DNA helicase Neighboring gene Signal recognition particle receptor subunit alpha Neighboring gene sphinganine-1-phosphate aldolase DPL1 Neighboring gene Hda2p

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    3'-5'-exoribonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA 3'-UTR binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mRNA 5'-UTR binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mRNA binding HDA PubMed 
    mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    translation repressor activity, mRNA regulatory element binding IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA phosphodiester bond hydrolysis, exonucleolytic IEA
    Inferred from Electronic Annotation
    more info
     
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular mRNA localization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mRNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of translation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    rRNA catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of fungal-type cell wall organization IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    P-body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cellular bud IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cellular bud neck IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasmic exosome (RNase complex) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    exosome (RNase complex) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear exosome (RNase complex) IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    mRNA-binding translational repressor SSD1
    NP_010579.1
    • Translational repressor with a role in polar growth and wall integrity; regulated by Cbk1p phosphorylation to effect bud-specific translational control and localization of specific mRNAs; interacts with TOR pathway components; contains a functional N-terminal nuclear localization sequence and nucleocytoplasmic shuttling appears to be critical to Ssd1p function

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      1045640..1049392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180601.1NP_010579.1  TPA: mRNA-binding translational repressor SSD1 [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010579.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P24276
      Conserved Domains (1) summary
      COG0557
      Location:5051149
      VacB; Exoribonuclease R [Transcription]
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