Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    TRPV1 transient receptor potential cation channel subfamily V member 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 445457, updated on 31-Oct-2016
    Gene symbol
    TRPV1
    Gene description
    transient receptor potential cation channel subfamily V member 1
    See related
    Ensembl:ENSCAFG00000019339
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    VR1
    Orthologs
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current CanFam3.1 (GCF_000002285.3) 9 NC_006591.3 (47404989..47436847, complement)

    Chromosome 9 - NC_006591.3Genomic Context describing neighboring genes Neighboring gene aspartoacylase Neighboring gene transient receptor potential cation channel subfamily V member 3 Neighboring gene sedoheptulokinase Neighboring gene cystinosin, lysosomal cystine transporter Neighboring gene Tax1 binding protein 3

    Genomic Sequence:
    NC_006591.3 Chromosome 9 Reference CanFam3.1 Primary Assembly

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    ATP binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    calcium channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    calcium-release channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
     
    excitatory extracellular ligand-gated ion channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    extracellular ligand-gated ion channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transmembrane signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    calcium ion import into cell ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    calcium ion transmembrane transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to ATP ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to acidic pH ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to alkaloid ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to heat ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein homotetramerization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    release of sequestered calcium ion into cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    response to capsazepine ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    dendritic spine membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    integral component of plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    intrinsic component of plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    postsynaptic membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    transient receptor potential cation channel subfamily V member 1
    Names
    OTRPC1
    osm-9-like TRP channel 1
    transient receptor potential V1
    vanilloid receptor 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003970.1NP_001003970.1  transient receptor potential cation channel subfamily V member 1

      See identical proteins and their annotated locations for NP_001003970.1

      Status: PROVISIONAL

      Source sequence(s)
      AY568758
      UniProtKB/Swiss-Prot
      Q697L1
      Related
      ENSCAFP00000028568, ENSCAFT00000030734
      Conserved Domains (3) summary
      cd00204
      Location:200354
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:61826
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:202232
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006591.3 Reference CanFam3.1 Primary Assembly

      Range
      47404989..47436847 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014116467.1XP_013971942.1  

      UniProtKB/TrEMBL
      F1Q304
      Conserved Domains (3) summary
      cd00204
      Location:200354
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:61826
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:202232
      ANK; ANK repeat [structural motif]
    2. XM_005624331.2XP_005624388.1  

      Conserved Domains (3) summary
      cd00204
      Location:153307
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:61779
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:155197
      ANK; ANK repeat [structural motif]
    3. XM_005624332.2XP_005624389.1  

      Conserved Domains (3) summary
      cd00204
      Location:153290
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:61772
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:202232
      ANK; ANK repeat [structural motif]
    4. XM_005624333.2XP_005624390.1  

      Conserved Domains (3) summary
      cd00204
      Location:200354
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:61741
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:202232
      ANK; ANK repeat [structural motif]
    Support Center