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    Ccr9 chemokine (C-C motif) receptor 9 [ Mus musculus (house mouse) ]

    Gene ID: 12769, updated on 21-Feb-2017
    Official Symbol
    Ccr9provided by MGI
    Official Full Name
    chemokine (C-C motif) receptor 9provided by MGI
    Primary source
    MGI:MGI:1341902
    See related
    Ensembl:ENSMUSG00000029530 Vega:OTTMUSG00000036110
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cmkbr10; GPR-9-6; A130091K22Rik
    Orthologs
    Location:
    9 F4; 9 74.33 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (123767211..123783457)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (123676329..123692575)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene Neighboring gene leucine zipper transcription factor-like 1 Neighboring gene predicted gene 17021 Neighboring gene FYVE and coiled-coil domain containing 1 Neighboring gene chemokine (C-X-C motif) receptor 6 Neighboring gene chemokine (C motif) receptor 1

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    C-C chemokine receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    G-protein coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    chemokine receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    signal transducer activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    CD8-positive, gamma-delta intraepithelial T cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    chemotaxis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    immune response IEA
    Inferred from Electronic Annotation
    more info
     
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    C-C chemokine receptor type 9
    Names
    C-C CKR-9
    CC-CKR-9
    CCR-9
    chemokine C-C receptor 10

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166625.1NP_001160097.1  C-C chemokine receptor type 9

      See identical proteins and their annotated locations for NP_001160097.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC165425
      Consensus CDS
      CCDS23662.1
      UniProtKB/Swiss-Prot
      Q9WUT7
      Related
      ENSMUSP00000126758, OTTMUSP00000051363, ENSMUST00000168910, OTTMUST00000092807
      Conserved Domains (1) summary
      pfam00001
      Location:65317
      7tm_1; 7 transmembrane receptor (rhodopsin family)
    2. NM_009913.6NP_034043.1  C-C chemokine receptor type 9

      See identical proteins and their annotated locations for NP_034043.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC165425, AK050615
      Consensus CDS
      CCDS23662.1
      UniProtKB/Swiss-Prot
      Q9WUT7
      Related
      ENSMUSP00000127024, OTTMUSP00000051361, ENSMUST00000166236, OTTMUST00000092805
      Conserved Domains (1) summary
      pfam00001
      Location:65317
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      123767211..123783457
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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