Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    Scd1 stearoyl-Coenzyme A desaturase 1 [ Mus musculus (house mouse) ]

    Gene ID: 20249, updated on 13-Aug-2017
    Official Symbol
    Scd1provided by MGI
    Official Full Name
    stearoyl-Coenzyme A desaturase 1provided by MGI
    Primary source
    MGI:MGI:98239
    See related
    Ensembl:ENSMUSG00000037071
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ab; Scd; Scd-1; AA589638; AI265570
    Location:
    19 C3; 19 37.98 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (44394450..44407709, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (44468940..44482199, complement)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene stearoyl-Coenzyme A desaturase 2 Neighboring gene microRNA 5114 Neighboring gene stearoyl-coenzyme A desaturase 4 Neighboring gene predicted gene, 35406 Neighboring gene wingless-type MMTV integration site family, member 8B

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    brown fat cell differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cholesterol esterification IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    defense response to Gram-positive bacterium IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    fatty acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid biosynthetic process TAS
    Traceable Author Statement
    more info
    PubMed 
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    monounsaturated fatty acid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    monounsaturated fatty acid biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    monounsaturated fatty acid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of growth of symbiont in host IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of cholesterol esterification TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of water loss via skin IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to fatty acid ISO
    Inferred from Sequence Orthology
    more info
     
    sebaceous gland development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    sterol esterification IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    tarsal gland development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    triglyceride metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    unsaturated fatty acid biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    white fat cell differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    membrane ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    acyl-CoA desaturase 1
    Names
    asebia
    delta(9)-desaturase 1
    fatty acid desaturase 1
    stearoyl-CoA desaturase 1
    NP_033153.2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009127.4NP_033153.2  acyl-CoA desaturase 1

      See identical proteins and their annotated locations for NP_033153.2

      Status: VALIDATED

      Source sequence(s)
      AA881780, AK012370, AK148103, BQ885468, BU053011, CD544724
      Consensus CDS
      CCDS29850.1
      UniProtKB/Swiss-Prot
      P13516
      UniProtKB/TrEMBL
      Q547C4
      Related
      ENSMUSP00000036936.2, ENSMUST00000041331.2
      Conserved Domains (2) summary
      cd03505
      Location:93333
      Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
      pfam00487
      Location:98301
      FA_desaturase; Fatty acid desaturase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      44394450..44407709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center