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    YCS4 condensin subunit YCS4 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 850977, updated on 14-Sep-2017
    Gene symbol
    YCS4
    Gene description
    condensin subunit YCS4
    Primary source
    SGD:S000004262
    Locus tag
    YLR272C
    Gene type
    protein coding
    RNA name
    condensin subunit YCS4
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    LOC7
    See YCS4 in Map Viewer
    Location:
    chromosome: XII
    Exon count:
    1
    Sequence:
    Chromosome: XII; NC_001144.5 (683672..687202, complement)

    Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene 5'-(N(7)-methyl 5'-triphosphoguanosine)-(mRNA) diphosphatase Neighboring gene Cmg1p Neighboring gene tRNA Neighboring gene protein phosphatase regulator PIG1

    Products Interactant Other Gene Complex Source Pubs Description

    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    contributes_to chromatin binding IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin silencing at silent mating-type cassette IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
     
    maintenance of rDNA IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    meiotic chromosome condensation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    meiotic chromosome separation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    mitotic chromosome condensation IEA
    Inferred from Electronic Annotation
    more info
     
    mitotic chromosome condensation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mitotic chromosome condensation IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    mitotic sister chromatid segregation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of meiotic DNA double-strand break formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    synaptonemal complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    tRNA gene clustering IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    condensed chromosome, centromeric region IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    nuclear condensin complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Names
    condensin subunit YCS4
    NP_013374.1
    • Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation, chromatin binding of condensin, tRNA gene clustering at the nucleolus, and silencing at the mating type locus; required for replication slow zone (RSZ) breakage following Mec1p inactivation

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001144.5 Reference assembly

      Range
      683672..687202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182159.1NP_013374.1  TPA: condensin subunit YCS4 [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013374.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q06156
      Conserved Domains (4) summary
      COG5098
      Location:11171
      COG5098; Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
      pfam12717
      Location:9901155
      Cnd1; non-SMC mitotic condensation complex subunit 1
      pfam12922
      Location:90235
      Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term
      sd00044
      Location:313342
      HEAT; HEAT repeat [structural motif]
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