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    Fancg Fanconi anemia, complementation group G [ Mus musculus (house mouse) ]

    Gene ID: 60534, updated on 17-Sep-2016
    Official Symbol
    Fancgprovided by MGI
    Official Full Name
    Fanconi anemia, complementation group Gprovided by MGI
    Primary source
    MGI:MGI:1926471
    See related
    Ensembl:ENSMUSG00000028453 Vega:OTTMUSG00000006687
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Xrcc9; AU041407
    Orthologs
    Location:
    4; 4 B1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (43002337..43010568, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (43015209..43023173, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700022I11 gene Neighboring gene valosin containing protein Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class O Neighboring gene stomatin (Epb7.2)-like 2 Neighboring gene family with sequence similarity 214, member B Neighboring gene predicted gene, 26881

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • MGC176243

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to DNA damage stimulus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mitochondrion organization ISO
    Inferred from Sequence Orthology
    more info
     
    ovarian follicle development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to radiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    spermatid development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    Fanconi anaemia nuclear complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    Fanconi anemia group G protein homolog

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163233.1NP_001156705.1  Fanconi anemia group G protein homolog isoform 2

      See identical proteins and their annotated locations for NP_001156705.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame segment compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AL672276, AY049715, BE292126, BY350437
      UniProtKB/Swiss-Prot
      Q9EQR6
      UniProtKB/TrEMBL
      A4QPC9
      Conserved Domains (2) summary
      sd00006
      Location:251280
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:251280
      TPR_1; Tetratricopeptide repeat
    2. NM_053081.2NP_444311.1  Fanconi anemia group G protein homolog isoform 1

      See identical proteins and their annotated locations for NP_444311.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AL672276, AY049715, BY350437
      Consensus CDS
      CCDS18087.1
      UniProtKB/Swiss-Prot
      Q9EQR6
      Related
      ENSMUSP00000030165, OTTMUSP00000007084, ENSMUST00000030165, OTTMUST00000015341
      Conserved Domains (3) summary
      COG0457
      Location:403582
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:251280
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:251280
      TPR_1; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      43002337..43010568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320336.1XP_017175825.1  

    2. XM_006538128.2XP_006538191.1  

      See identical proteins and their annotated locations for XP_006538191.1

      UniProtKB/Swiss-Prot
      Q9EQR6
      Conserved Domains (3) summary
      COG0457
      Location:403582
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:251280
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:251280
      TPR_1; Tetratricopeptide repeat
    3. XM_006538127.2XP_006538190.1  

      See identical proteins and their annotated locations for XP_006538190.1

      UniProtKB/Swiss-Prot
      Q9EQR6
      Conserved Domains (3) summary
      COG0457
      Location:403582
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:251280
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:251280
      TPR_1; Tetratricopeptide repeat
    4. XM_006538132.2XP_006538195.1  

      Conserved Domains (3) summary
      sd00006
      Location:251280
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:251280
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:252300
      TPR_11; TPR repeat

    RNA

    1. XR_001784169.1 RNA Sequence

    2. XR_001784174.1 RNA Sequence

    3. XR_001784173.1 RNA Sequence

    4. XR_001784172.1 RNA Sequence

    5. XR_390333.3 RNA Sequence

    6. XR_390335.2 RNA Sequence

    7. XR_001784170.1 RNA Sequence

      Related
      ENSMUST00000123332
    8. XR_390336.3 RNA Sequence

    9. XR_001784171.1 RNA Sequence

    10. XR_390334.2 RNA Sequence

    11. XR_390337.1 RNA Sequence

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