Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    Chst4 carbohydrate (chondroitin 6/keratan) sulfotransferase 4 [ Mus musculus (house mouse) ]

    Gene ID: 26887, updated on 23-May-2018
    Official Symbol
    Chst4provided by MGI
    Official Full Name
    carbohydrate (chondroitin 6/keratan) sulfotransferase 4provided by MGI
    Primary source
    MGI:MGI:1349479
    See related
    Ensembl:ENSMUSG00000035930 Vega:OTTMUSG00000061887
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GST-3; Gn6st-2; HEC-GlcNAc6ST
    Expression
    Biased expression in colon adult (RPKM 33.9), large intestine adult (RPKM 14.4) and 6 other tissues See more
    Orthologs
    See Chst4 in Genome Data Viewer
    Location:
    8; 8 D3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (110029075..110039374, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (112552975..112563234, complement)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene tyrosine aminotransferase Neighboring gene RIKEN cDNA 1700064F23 gene Neighboring gene RIKEN cDNA 8030455M16 gene Neighboring gene zinc finger protein 612

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    N-acetylglucosamine 6-O-sulfotransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    N-acetylglucosamine 6-O-sulfotransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    N-acetylglucosamine metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    N-acetylglucosamine metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    inflammatory response IEA
    Inferred from Electronic Annotation
    more info
     
    leukocyte tethering or rolling IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein sulfation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein sulfation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    sulfur compound metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    sulfur compound metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    carbohydrate sulfotransferase 4
    Names
    L-selectin ligand sulfotransferase
    LSST
    N-acetylglucosamine 6-O-sulfotransferase 2
    galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 3
    glcNAc6ST-2
    high endothelial cell GlcNAC-6-sulphotransferase
    high endothelial cells N-acetylglucosamine 6-O-sulfotransferase
    NP_036128.3
    XP_006531106.1
    XP_006531107.1
    XP_006531108.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011998.4NP_036128.3  carbohydrate sulfotransferase 4

      See identical proteins and their annotated locations for NP_036128.3

      Status: VALIDATED

      Source sequence(s)
      AA672072, AI614882, AK009113
      Consensus CDS
      CCDS22659.1
      UniProtKB/Swiss-Prot
      Q9R1I1
      UniProtKB/TrEMBL
      A0A0R4J1C9
      Related
      ENSMUSP00000104845.2, OTTMUSP00000078321, ENSMUST00000109222.3, OTTMUST00000151025
      Conserved Domains (1) summary
      cl21551
      Location:181357
      Sulfotransfer_1; Sulfotransferase domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      110029075..110039374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531044.2XP_006531107.1  carbohydrate sulfotransferase 4 isoform X1

      See identical proteins and their annotated locations for XP_006531107.1

      UniProtKB/Swiss-Prot
      Q9R1I1
      UniProtKB/TrEMBL
      A0A0R4J1C9
      Conserved Domains (1) summary
      cl21551
      Location:181357
      Sulfotransfer_1; Sulfotransferase domain
    2. XM_006531043.3XP_006531106.1  carbohydrate sulfotransferase 4 isoform X1

      See identical proteins and their annotated locations for XP_006531106.1

      UniProtKB/Swiss-Prot
      Q9R1I1
      UniProtKB/TrEMBL
      A0A0R4J1C9
      Conserved Domains (1) summary
      cl21551
      Location:181357
      Sulfotransfer_1; Sulfotransferase domain
    3. XM_006531045.3XP_006531108.1  carbohydrate sulfotransferase 4 isoform X1

      See identical proteins and their annotated locations for XP_006531108.1

      UniProtKB/Swiss-Prot
      Q9R1I1
      UniProtKB/TrEMBL
      A0A0R4J1C9
      Conserved Domains (1) summary
      cl21551
      Location:181357
      Sulfotransfer_1; Sulfotransferase domain
    Support Center