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    ELL3 elongation factor for RNA polymerase II 3 [ Homo sapiens (human) ]

    Gene ID: 80237, updated on 9-Jul-2017
    Official Symbol
    ELL3provided by HGNC
    Official Full Name
    elongation factor for RNA polymerase II 3provided by HGNC
    Primary source
    HGNC:HGNC:23113
    See related
    Ensembl:ENSG00000128886 MIM:609885; Vega:OTTHUMG00000059936
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Orthologs
    Location:
    15q15.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    108 current GRCh38.p7 (GCF_000001405.33) 15 NC_000015.10 (43772600..43777304, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (44064798..44069502, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 354, pseudogene Neighboring gene cation channel sperm associated 2 pseudogene 1 Neighboring gene protein disulfide isomerase family A member 3 Neighboring gene small EDRK-rich factor 2 Neighboring gene SERF2-C15orf63 readthrough Neighboring gene microRNA 1282 Neighboring gene serine incorporator 4

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • Gene Expression, organism-specific biosystem (from REACTOME)
      Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
    • RNA polymerase II transcribes snRNA genes, organism-specific biosystem (from REACTOME)
      RNA polymerase II transcribes snRNA genes, organism-specific biosystemSmall nuclear RNAs (snRNAs) play key roles in splicing and some of them, specifically the U1 and U2 snRNAs, are encoded by multicopy snRNA gene clusters containing tandem arrays of genes, about 30 in...
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • FLJ22637

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enhancer binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleolus IDA
    Inferred from Direct Assay
    more info
     
    nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription elongation factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription elongation factor complex NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Preferred Names
    RNA polymerase II elongation factor ELL3
    Names
    elongation factor RNA polymerase II-like 3

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025165.2NP_079441.1  RNA polymerase II elongation factor ELL3

      See identical proteins and their annotated locations for NP_079441.1

      Status: VALIDATED

      Source sequence(s)
      AC018512, AI955716, AK126384
      Consensus CDS
      CCDS10102.1
      UniProtKB/Swiss-Prot
      Q9HB65
      Related
      ENSP00000320346.3, OTTHUMP00000066301, ENST00000319359.7, OTTHUMT00000133236
      Conserved Domains (2) summary
      pfam07303
      Location:294391
      Occludin_ELL; Occludin homology domain
      pfam15553
      Location:244283
      TEX19; Testis-expressed protein 19

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p7 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p7 Primary Assembly

      Range
      43772600..43777304 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.1

    Genomic

    1. NC_018926.2 Alternate CHM1_1.1

      Range
      44183054..44187758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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