Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    YOL103W-B gag-pol fusion protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 854049, updated on 5-Jun-2017
    Gene symbol
    YOL103W-B
    Gene description
    gag-pol fusion protein
    Primary source
    SGD:S000007350
    Locus tag
    YOL103W-B
    Gene type
    protein coding
    RNA name
    gag-pol fusion protein
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    See YOL103W-B in Map Viewer
    Location:
    chromosome: XV
    Exon count:
    1
    Sequence:
    Chromosome: XV; NC_001147.6 (118000..123268)

    Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene Wsc3p Neighboring gene Ndj1p Neighboring gene gag protein Neighboring gene myo-inositol transporter ITR2 Neighboring gene tRNA 2'-phosphotransferase

    Products Interactant Other Gene Complex Source Pubs Description

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-directed DNA polymerase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
     
    RNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
     
    RNA-directed DNA polymerase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nuclease activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    peptidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    ribonuclease activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    DNA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    DNA integration IEA
    Inferred from Electronic Annotation
    more info
     
    DNA recombination IEA
    Inferred from Electronic Annotation
    more info
     
    RNA phosphodiester bond hydrolysis IEA
    Inferred from Electronic Annotation
    more info
     
    RNA phosphodiester bond hydrolysis, endonucleolytic IEA
    Inferred from Electronic Annotation
    more info
     
    RNA-dependent DNA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid phosphodiester bond hydrolysis IEA
    Inferred from Electronic Annotation
    more info
     
    proteolysis IEA
    Inferred from Electronic Annotation
    more info
     
    transposition IEA
    Inferred from Electronic Annotation
    more info
     
    transposition, RNA-mediated ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    retrotransposon nucleocapsid ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Names
    gag-pol fusion protein
    NP_058181.1
    • Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001147.6 Reference assembly

      Range
      118000..123268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001184384.2NP_058181.1  TPA: gag-pol fusion protein [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_058181.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q12273
      Conserved Domains (4) summary
      cd09272
      Location:16061742
      RNase_HI_RT_Ty1; Ty1/Copia family of RNase HI in long-term repeat retroelements
      pfam00665
      Location:664782
      rve; Integrase core domain
      pfam01021
      Location:17114
      TYA; TYA transposon protein
      pfam07727
      Location:12811494
      RVT_2; Reverse transcriptase (RNA-dependent DNA polymerase)
    Support Center