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    COL1A1 collagen type I alpha 1 chain [ Bos taurus (cattle) ]

    Gene ID: 282187, updated on 18-Mar-2017
    Gene symbol
    COL1A1
    Gene description
    collagen type I alpha 1 chain
    See related
    BGD:BT10494; Ensembl:ENSBTAG00000013103
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    Location:
    chromosome: 19
    Exon count:
    51
    Annotation release Status Assembly Chr Location
    105 current Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 19 AC_000176.1 (37088246..37105011)

    Chromosome 19 - AC_000176.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 92 Neighboring gene histone H2B type 1 Neighboring gene sarcoglycan alpha Neighboring gene histone linker H1 domain, spermatid-specific 1 Neighboring gene protein phosphatase 1 regulatory subunit 9B

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Clone Names

    • MGC128258

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    platelet-derived growth factor binding IEA
    Inferred from Electronic Annotation
    more info
     
    protease binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    blood vessel development IEA
    Inferred from Electronic Annotation
    more info
     
    bone trabecula formation IEA
    Inferred from Electronic Annotation
    more info
     
    cartilage development involved in endochondral bone morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to amino acid stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to mechanical stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    collagen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    collagen fibril organization IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic skeletal system development IEA
    Inferred from Electronic Annotation
    more info
     
    endochondral ossification IEA
    Inferred from Electronic Annotation
    more info
     
    face morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    intramembranous ossification IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of cell-substrate adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    osteoblast differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of epithelial to mesenchymal transition IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    protein heterotrimerization IEA
    Inferred from Electronic Annotation
    more info
     
    protein localization to nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
     
    skin morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    tooth mineralization IEA
    Inferred from Electronic Annotation
    more info
     
    visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    collagen type I trimer IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    collagen alpha-1(I) chain
    Names
    alpha-1 type I collagen
    collagen, type I, alpha 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034039.2NP_001029211.1  collagen alpha-1(I) chain precursor

      See identical proteins and their annotated locations for NP_001029211.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105184
      UniProtKB/Swiss-Prot
      P02453
      Related
      ENSBTAP00000017420, ENSBTAT00000017420
      Conserved Domains (3) summary
      pfam01391
      Location:235294
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:4095
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:12291462
      COLFI; Fibrillar collagen C-terminal domain

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bos_taurus_UMD_3.1.1 Primary Assembly

    Genomic

    1. AC_000176.1 Reference Bos_taurus_UMD_3.1.1 Primary Assembly

      Range
      37088246..37105011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Btau_5.0.1

    Genomic

    1. NC_007317.6 Alternate Btau_5.0.1

      Range
      37254235..37271000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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