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    prkab2 protein kinase, AMP-activated, beta 2 non-catalytic subunit [ Cyprinus carpio (common carp) ]

    Gene ID: 109084738, updated on 14-Mar-2024

    Summary

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    Gene symbol
    prkab2
    Gene description
    protein kinase, AMP-activated, beta 2 non-catalytic subunit
    See related
    Ensembl:ENSCCRG00000046138
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cyprinus carpio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
    Orthologs
    zebrafish all
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    Genomic context

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    See prkab2 in Genome Data Viewer
    Location:
    chromosome: A2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current ASM1834038v1 (GCF_018340385.1) A2 NC_056573.1 (23837535..23846624)
    100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017543421.1 (4347..13471)

    Chromosome A2 - NC_056573.1Genomic Context describing neighboring genes Neighboring gene CD48 antigen-like Neighboring gene uncharacterized LOC109058068 Neighboring gene uncharacterized LOC109058069 Neighboring gene myomegalin-like Neighboring gene protein phosphatase 1K, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nucleotide-activated protein kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5'-AMP-activated protein kinase subunit beta-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1834038v1 Primary Assembly

    Genomic

    1. NC_056573.1 Reference ASM1834038v1 Primary Assembly

      Range
      23837535..23846624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042711606.1 → XP_042567540.1  5'-AMP-activated protein kinase subunit beta-2 isoform X1

      UniProtKB/TrEMBL
      A0A8C1F1G3, A0A8C1VMJ9, A0A9Q9VM43
      Conserved Domains (2) summary
      cd02859
      Location:74 → 151
      E_set_AMPKbeta_like_N; N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit
      smart01010
      Location:181 → 270
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain

    2. XM_042711618.1 → XP_042567552.1  5'-AMP-activated protein kinase subunit beta-2 isoform X2

      UniProtKB/TrEMBL
      A0A8C1VMJ9, A0A9Q9VM48
      Conserved Domains (2) summary
      smart01010
      Location:177 → 266
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
      pfam16561
      Location:73 → 157
      AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

    3. XM_042711611.1 → XP_042567545.1  5'-AMP-activated protein kinase subunit beta-2 isoform X1

      UniProtKB/TrEMBL
      A0A8C1F1G3, A0A8C1VMJ9, A0A9Q9VM43
      Conserved Domains (2) summary
      cd02859
      Location:74 → 151
      E_set_AMPKbeta_like_N; N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit
      smart01010
      Location:181 → 270
      AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
    Nucleotide Protein
    Heading Accession and Version

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